Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
USP41Q3LFD5 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
USP41Q3LFD5 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
USP41Q3LFD5 AC114774.1-201ENST00000507410 1770 ntBASIC5.83□□□□□ -1.48
USP41Q3LFD5 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP41Q3LFD5 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 AL138820.1-201ENST00000617901 5305 ntBASIC5.82□□□□□ -1.48
USP41Q3LFD5 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP41Q3LFD5 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
USP41Q3LFD5 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
USP41Q3LFD5 RNU2-72P-201ENST00000411175 163 ntBASIC5.82□□□□□ -1.48
USP41Q3LFD5 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 AL389915.2-201ENST00000454576 441 ntBASIC5.82□□□□□ -1.48
USP41Q3LFD5 AL035090.1-201ENST00000454835 332 ntBASIC5.82□□□□□ -1.48
USP41Q3LFD5 PDCL3P4-201ENST00000489621 720 ntBASIC5.82□□□□□ -1.48
USP41Q3LFD5 RN7SL808P-201ENST00000496066 299 ntBASIC5.82□□□□□ -1.48
USP41Q3LFD5 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 SNRPCP2-201ENST00000504370 475 ntBASIC5.82□□□□□ -1.48
USP41Q3LFD5 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 AC026782.2-201ENST00000510845 636 ntBASIC5.82□□□□□ -1.48
USP41Q3LFD5 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 RNU6-941P-201ENST00000516346 108 ntBASIC5.82□□□□□ -1.48
USP41Q3LFD5 AP006245.2-201ENST00000522004 300 ntBASIC5.82□□□□□ -1.48
USP41Q3LFD5 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 OR8K2P-201ENST00000524645 927 ntBASIC5.82□□□□□ -1.48
USP41Q3LFD5 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
USP41Q3LFD5 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
USP41Q3LFD5 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 AC106730.2-201ENST00000566641 540 ntBASIC5.82□□□□□ -1.48
USP41Q3LFD5 AP005403.1-201ENST00000579720 229 ntBASIC5.82□□□□□ -1.48
USP41Q3LFD5 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP41Q3LFD5 AL442128.2-201ENST00000620246 1824 ntBASIC5.82□□□□□ -1.48
USP41Q3LFD5 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP41Q3LFD5 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
USP41Q3LFD5 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP41Q3LFD5 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
USP41Q3LFD5 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP41Q3LFD5 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP41Q3LFD5 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP41Q3LFD5 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP41Q3LFD5 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.82□□□□□ -1.48
USP41Q3LFD5 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP41Q3LFD5 AP002512.4-202ENST00000641599 4530 ntBASIC5.82□□□□□ -1.48
USP41Q3LFD5 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP41Q3LFD5 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP41Q3LFD5 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC5.81□□□□□ -1.48
USP41Q3LFD5 OR4F13P-202ENST00000560066 2054 ntBASIC5.81□□□□□ -1.48
USP41Q3LFD5 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
USP41Q3LFD5 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.81□□□□□ -1.48
USP41Q3LFD5 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP41Q3LFD5 RNU1-43P-201ENST00000365052 165 ntBASIC5.81□□□□□ -1.48
USP41Q3LFD5 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP41Q3LFD5 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
USP41Q3LFD5 RNU1-149P-201ENST00000390870 161 ntBASIC5.81□□□□□ -1.48
USP41Q3LFD5 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.81□□□□□ -1.48
USP41Q3LFD5 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
USP41Q3LFD5 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.81□□□□□ -1.48
USP41Q3LFD5 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC5.81□□□□□ -1.48
USP41Q3LFD5 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.81□□□□□ -1.48
USP41Q3LFD5 AL445528.1-201ENST00000426330 420 ntBASIC5.81□□□□□ -1.48
USP41Q3LFD5 RPL12P17-201ENST00000432393 498 ntBASIC5.81□□□□□ -1.48
USP41Q3LFD5 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
USP41Q3LFD5 RAB9AP5-201ENST00000437794 597 ntBASIC5.81□□□□□ -1.48
USP41Q3LFD5 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC5.81□□□□□ -1.48
USP41Q3LFD5 RAB9AP2-201ENST00000443911 597 ntBASIC5.81□□□□□ -1.48
USP41Q3LFD5 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC5.81□□□□□ -1.48
USP41Q3LFD5 RNU6-760P-201ENST00000516078 97 ntBASIC5.81□□□□□ -1.48
USP41Q3LFD5 AC138832.1-201ENST00000522871 556 ntBASIC5.81□□□□□ -1.48
USP41Q3LFD5 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
USP41Q3LFD5 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC5.81□□□□□ -1.48
USP41Q3LFD5 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.81□□□□□ -1.48
USP41Q3LFD5 MIR3691-201ENST00000578066 90 ntBASIC5.81□□□□□ -1.48
USP41Q3LFD5 RN7SL708P-201ENST00000580952 299 ntBASIC5.81□□□□□ -1.48
USP41Q3LFD5 AC060780.2-201ENST00000589047 198 ntBASIC5.81□□□□□ -1.48
USP41Q3LFD5 AC069307.1-201ENST00000602820 447 ntBASIC5.81□□□□□ -1.48
USP41Q3LFD5 AC005972.3-201ENST00000606304 481 ntBASIC5.81□□□□□ -1.48
USP41Q3LFD5 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.81□□□□□ -1.48
USP41Q3LFD5 AC119674.1-220ENST00000641502 1048 ntBASIC5.81□□□□□ -1.48
USP41Q3LFD5 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP41Q3LFD5 AL158152.1-201ENST00000602652 1435 ntBASIC5.81□□□□□ -1.48
USP41Q3LFD5 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP41Q3LFD5 AC068870.1-201ENST00000563737 2455 ntBASIC5.81□□□□□ -1.48
USP41Q3LFD5 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms