Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RN7SL165P-201ENST00000477476 291 ntBASIC6.92□□□□□ -1.3
LIG3P49916 NCOR1P1-202ENST00000486162 291 ntBASIC6.92□□□□□ -1.3
LIG3P49916 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC6.92□□□□□ -1.3
LIG3P49916 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
LIG3P49916 AC147055.4-201ENST00000504399 745 ntBASIC6.92□□□□□ -1.3
LIG3P49916 CBX3P3-201ENST00000508108 532 ntBASIC6.92□□□□□ -1.3
LIG3P49916 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC6.92□□□□□ -1.3
LIG3P49916 MEF2C-AS1-211ENST00000514092 501 ntTSL 3 BASIC6.92□□□□□ -1.3
LIG3P49916 AC131935.1-201ENST00000524621 333 ntBASIC6.92□□□□□ -1.3
LIG3P49916 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC6.92□□□□□ -1.3
LIG3P49916 OR4A21P-201ENST00000532759 944 ntBASIC6.92□□□□□ -1.3
LIG3P49916 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
LIG3P49916 NXPE2P1-201ENST00000543705 726 ntBASIC6.92□□□□□ -1.3
LIG3P49916 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC6.92□□□□□ -1.3
LIG3P49916 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC6.92□□□□□ -1.3
LIG3P49916 HMGN1P26-201ENST00000558737 303 ntBASIC6.92□□□□□ -1.3
LIG3P49916 NIFKP8-201ENST00000560500 874 ntBASIC6.92□□□□□ -1.3
LIG3P49916 PDCD6IPP2-207ENST00000566321 1069 ntBASIC6.92□□□□□ -1.3
LIG3P49916 AC092718.4-201ENST00000566639 716 ntBASIC6.92□□□□□ -1.3
LIG3P49916 AC134312.6-201ENST00000568587 444 ntTSL 5 BASIC6.92□□□□□ -1.3
LIG3P49916 AC011260.1-201ENST00000578420 472 ntBASIC6.92□□□□□ -1.3
LIG3P49916 AC107982.3-201ENST00000584957 985 ntBASIC6.92□□□□□ -1.3
LIG3P49916 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC6.92□□□□□ -1.3
LIG3P49916 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC6.92□□□□□ -1.3
LIG3P49916 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC6.92□□□□□ -1.3
LIG3P49916 AC018714.1-201ENST00000605028 208 ntBASIC6.92□□□□□ -1.3
LIG3P49916 AC128687.1-201ENST00000605304 619 ntBASIC6.92□□□□□ -1.3
LIG3P49916 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC6.92□□□□□ -1.3
LIG3P49916 AL135786.2-201ENST00000608422 615 ntBASIC6.92□□□□□ -1.3
LIG3P49916 AC131235.4-201ENST00000609288 620 ntBASIC6.92□□□□□ -1.3
LIG3P49916 AC087241.4-201ENST00000612441 480 ntBASIC6.92□□□□□ -1.3
LIG3P49916 AC011472.4-201ENST00000615848 491 ntBASIC6.92□□□□□ -1.3
LIG3P49916 AC015804.1-201ENST00000622935 435 ntBASIC6.92□□□□□ -1.3
LIG3P49916 AC116618.1-201ENST00000634617 774 ntBASIC6.92□□□□□ -1.3
LIG3P49916 LINC01141-204ENST00000635564 1008 ntTSL 5 BASIC6.92□□□□□ -1.3
LIG3P49916 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC6.92□□□□□ -1.3
LIG3P49916 AC119674.1-212ENST00000641155 993 ntBASIC6.92□□□□□ -1.3
LIG3P49916 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC6.92□□□□□ -1.3
LIG3P49916 LINC01252-201ENST00000499291 3673 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
LIG3P49916 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
LIG3P49916 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC6.92□□□□□ -1.3
LIG3P49916 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
LIG3P49916 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC6.92□□□□□ -1.3
LIG3P49916 AL158152.1-201ENST00000602652 1435 ntBASIC6.92□□□□□ -1.3
LIG3P49916 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC6.92□□□□□ -1.3
LIG3P49916 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
LIG3P49916 AC011455.2-201ENST00000599320 3336 ntBASIC6.91□□□□□ -1.3
LIG3P49916 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.3
LIG3P49916 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.91□□□□□ -1.3
LIG3P49916 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
LIG3P49916 AC095038.1-201ENST00000429248 1591 ntBASIC6.91□□□□□ -1.3
LIG3P49916 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC6.91□□□□□ -1.3
LIG3P49916 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC6.91□□□□□ -1.3
LIG3P49916 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC6.91□□□□□ -1.3
LIG3P49916 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
LIG3P49916 RBPJ-214ENST00000507561 1689 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
LIG3P49916 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
LIG3P49916 GMFG-201ENST00000253054 616 ntTSL 5 BASIC6.91□□□□□ -1.3
LIG3P49916 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC6.91□□□□□ -1.3
LIG3P49916 Y_RNA.6-201ENST00000362350 114 ntBASIC6.91□□□□□ -1.3
LIG3P49916 U3.4-201ENST00000363352 213 ntBASIC6.91□□□□□ -1.3
LIG3P49916 RN7SKP47-201ENST00000365347 328 ntBASIC6.91□□□□□ -1.3
LIG3P49916 AL591503.1-201ENST00000366224 477 ntTSL 5 BASIC6.91□□□□□ -1.3
LIG3P49916 PAGE2-201ENST00000374965 456 ntTSL 2 BASIC6.91□□□□□ -1.3
LIG3P49916 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
LIG3P49916 AP000812.1-201ENST00000378140 477 ntTSL 3 BASIC6.91□□□□□ -1.3
LIG3P49916 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC6.91□□□□□ -1.3
LIG3P49916 AL079341.1-201ENST00000404701 1207 ntBASIC6.91□□□□□ -1.3
LIG3P49916 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
LIG3P49916 TANK-206ENST00000406287 875 ntTSL 5 BASIC6.91□□□□□ -1.3
LIG3P49916 RN7SKP91-201ENST00000410852 288 ntBASIC6.91□□□□□ -1.3
LIG3P49916 AC092745.2-202ENST00000411880 369 ntBASIC6.91□□□□□ -1.3
LIG3P49916 RPLP1P10-201ENST00000413972 339 ntBASIC6.91□□□□□ -1.3
LIG3P49916 MRPS36P1-201ENST00000421291 307 ntBASIC6.91□□□□□ -1.3
LIG3P49916 IPPKP1-201ENST00000422501 768 ntBASIC6.91□□□□□ -1.3
LIG3P49916 AC007568.1-201ENST00000422912 471 ntBASIC6.91□□□□□ -1.3
LIG3P49916 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC6.91□□□□□ -1.3
LIG3P49916 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC6.91□□□□□ -1.3
LIG3P49916 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC6.91□□□□□ -1.3
LIG3P49916 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC6.91□□□□□ -1.3
LIG3P49916 UBQLN1P1-207ENST00000441056 1169 ntBASIC6.91□□□□□ -1.3
LIG3P49916 MTND1P30-201ENST00000441241 901 ntBASIC6.91□□□□□ -1.3
LIG3P49916 HMGN1P32-201ENST00000441744 256 ntBASIC6.91□□□□□ -1.3
LIG3P49916 ARL5AP2-201ENST00000444698 533 ntBASIC6.91□□□□□ -1.3
LIG3P49916 COX6CP2-201ENST00000444980 225 ntBASIC6.91□□□□□ -1.3
LIG3P49916 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC6.91□□□□□ -1.3
LIG3P49916 PPIAP32-201ENST00000449940 472 ntBASIC6.91□□□□□ -1.3
LIG3P49916 GOT2P2-201ENST00000450663 1251 ntBASIC6.91□□□□□ -1.3
LIG3P49916 RPL7AP71-201ENST00000451120 739 ntBASIC6.91□□□□□ -1.3
LIG3P49916 HNRNPDLP3-201ENST00000456745 380 ntBASIC6.91□□□□□ -1.3
LIG3P49916 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC6.91□□□□□ -1.3
LIG3P49916 RN7SL790P-201ENST00000474043 298 ntBASIC6.91□□□□□ -1.3
LIG3P49916 AC117395.1-201ENST00000487390 403 ntBASIC6.91□□□□□ -1.3
LIG3P49916 RN7SL350P-201ENST00000492591 299 ntBASIC6.91□□□□□ -1.3
LIG3P49916 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC6.91□□□□□ -1.3
LIG3P49916 AC139713.2-212ENST00000506982 832 ntTSL 5 BASIC6.91□□□□□ -1.3
LIG3P49916 CDC42P4-201ENST00000510507 563 ntBASIC6.91□□□□□ -1.3
LIG3P49916 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC6.91□□□□□ -1.3
LIG3P49916 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
LIG3P49916 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC6.91□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms