Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 DLEU1_1.1-201ENST00000618107 190 ntBASIC6.16□□□□□ -1.42
BRCA1P38398 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
BRCA1P38398 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC6.16□□□□□ -1.42
BRCA1P38398 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
BRCA1P38398 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
BRCA1P38398 OR56B2P-202ENST00000641377 2453 ntBASIC6.16□□□□□ -1.42
BRCA1P38398 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC6.16□□□□□ -1.42
BRCA1P38398 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
BRCA1P38398 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC6.16□□□□□ -1.42
BRCA1P38398 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
BRCA1P38398 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
BRCA1P38398 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
BRCA1P38398 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
BRCA1P38398 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC6.15□□□□□ -1.42
BRCA1P38398 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC6.15□□□□□ -1.42
BRCA1P38398 RPL34P27-201ENST00000428810 349 ntBASIC6.15□□□□□ -1.42
BRCA1P38398 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC6.15□□□□□ -1.42
BRCA1P38398 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC6.15□□□□□ -1.42
BRCA1P38398 RPS17P2-201ENST00000461663 408 ntBASIC6.15□□□□□ -1.42
BRCA1P38398 RN7SL443P-201ENST00000464331 290 ntBASIC6.15□□□□□ -1.42
BRCA1P38398 CR383656.1-201ENST00000484916 377 ntBASIC6.15□□□□□ -1.42
BRCA1P38398 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC6.15□□□□□ -1.42
BRCA1P38398 AC060780.2-201ENST00000589047 198 ntBASIC6.15□□□□□ -1.42
BRCA1P38398 AL121890.3-201ENST00000618494 516 ntBASIC6.15□□□□□ -1.42
BRCA1P38398 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
BRCA1P38398 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC6.15□□□□□ -1.42
BRCA1P38398 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
BRCA1P38398 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC6.15□□□□□ -1.42
BRCA1P38398 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC6.15□□□□□ -1.42
BRCA1P38398 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
BRCA1P38398 PCNX1-201ENST00000304743 12919 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
BRCA1P38398 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC6.15□□□□□ -1.43
BRCA1P38398 NCLP2-201ENST00000416078 1462 ntBASIC6.15□□□□□ -1.43
BRCA1P38398 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
BRCA1P38398 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
BRCA1P38398 RNU4-39P-201ENST00000362455 127 ntBASIC6.15□□□□□ -1.43
BRCA1P38398 SNORA2.3-201ENST00000383920 135 ntBASIC6.15□□□□□ -1.43
BRCA1P38398 MIR23B-201ENST00000384832 97 ntBASIC6.15□□□□□ -1.43
BRCA1P38398 Z97832.1-201ENST00000402490 328 ntBASIC6.15□□□□□ -1.43
BRCA1P38398 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC6.15□□□□□ -1.43
BRCA1P38398 HYALP1-201ENST00000417674 1279 ntBASIC6.15□□□□□ -1.43
BRCA1P38398 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC6.15□□□□□ -1.43
BRCA1P38398 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC6.15□□□□□ -1.43
BRCA1P38398 RNA5SP464-201ENST00000516251 108 ntBASIC6.15□□□□□ -1.43
BRCA1P38398 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.43
BRCA1P38398 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC6.15□□□□□ -1.43
BRCA1P38398 AP005119.2-201ENST00000579735 1105 ntBASIC6.15□□□□□ -1.43
BRCA1P38398 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC6.15□□□□□ -1.43
BRCA1P38398 MIR6853-201ENST00000619642 74 ntBASIC6.15□□□□□ -1.43
BRCA1P38398 OR8B1P-202ENST00000641132 1178 ntBASIC6.15□□□□□ -1.43
BRCA1P38398 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC6.15□□□□□ -1.43
BRCA1P38398 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC6.15□□□□□ -1.43
BRCA1P38398 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.15□□□□□ -1.43
BRCA1P38398 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
BRCA1P38398 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
BRCA1P38398 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
BRCA1P38398 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
BRCA1P38398 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC6.14□□□□□ -1.43
BRCA1P38398 SSPO-201ENST00000378016 15589 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
BRCA1P38398 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
BRCA1P38398 DLG2-211ENST00000426717 5927 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
BRCA1P38398 AP000756.2-201ENST00000624168 2567 ntBASIC6.14□□□□□ -1.43
BRCA1P38398 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC6.14□□□□□ -1.43
BRCA1P38398 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
BRCA1P38398 IGKV7-3-201ENST00000357453 298 ntBASIC6.14□□□□□ -1.43
BRCA1P38398 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
BRCA1P38398 RPL12P43-201ENST00000420608 499 ntBASIC6.14□□□□□ -1.43
BRCA1P38398 IGKV1OR9-1-201ENST00000424370 284 ntBASIC6.14□□□□□ -1.43
BRCA1P38398 RPL12P28-201ENST00000430852 489 ntBASIC6.14□□□□□ -1.43
BRCA1P38398 AC073465.2-201ENST00000440938 498 ntBASIC6.14□□□□□ -1.43
BRCA1P38398 AC091167.1-201ENST00000492017 396 ntBASIC6.14□□□□□ -1.43
BRCA1P38398 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC6.14□□□□□ -1.43
BRCA1P38398 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC6.14□□□□□ -1.43
BRCA1P38398 AC068831.4-201ENST00000556118 109 ntBASIC6.14□□□□□ -1.43
BRCA1P38398 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
BRCA1P38398 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
BRCA1P38398 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
BRCA1P38398 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
BRCA1P38398 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
BRCA1P38398 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC6.14□□□□□ -1.43
BRCA1P38398 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
BRCA1P38398 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
BRCA1P38398 PLEKHG1-201ENST00000358517 7138 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
BRCA1P38398 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
BRCA1P38398 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC6.14□□□□□ -1.43
BRCA1P38398 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC6.14□□□□□ -1.43
BRCA1P38398 GON4L-204ENST00000437809 7713 ntAPPRIS P3 TSL 5 BASIC6.14□□□□□ -1.43
BRCA1P38398 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC6.14□□□□□ -1.43
BRCA1P38398 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC6.14□□□□□ -1.43
BRCA1P38398 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
BRCA1P38398 AC068446.1-201ENST00000556425 1549 ntBASIC6.13□□□□□ -1.43
BRCA1P38398 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC6.13□□□□□ -1.43
BRCA1P38398 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC6.13□□□□□ -1.43
BRCA1P38398 SNORA37-201ENST00000384504 129 ntBASIC6.13□□□□□ -1.43
BRCA1P38398 RNA5SP397-201ENST00000391323 118 ntBASIC6.13□□□□□ -1.43
BRCA1P38398 AL021331.1-201ENST00000402817 582 ntBASIC6.13□□□□□ -1.43
BRCA1P38398 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC6.13□□□□□ -1.43
BRCA1P38398 RPL7AP52-201ENST00000458096 790 ntBASIC6.13□□□□□ -1.43
BRCA1P38398 AC116562.1-201ENST00000485355 781 ntBASIC6.13□□□□□ -1.43
BRCA1P38398 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms