Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SNX18P13-201ENST00000412442 529 ntBASIC6.95□□□□□ -1.3
MSX1P28360 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC6.95□□□□□ -1.3
MSX1P28360 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC6.95□□□□□ -1.3
MSX1P28360 TMSB4XP6-201ENST00000415187 135 ntBASIC6.95□□□□□ -1.3
MSX1P28360 AL390195.1-202ENST00000416099 723 ntTSL 2 BASIC6.95□□□□□ -1.3
MSX1P28360 AL592293.2-201ENST00000422292 996 ntBASIC6.95□□□□□ -1.3
MSX1P28360 TMSB4XP1-201ENST00000424567 135 ntBASIC6.95□□□□□ -1.3
MSX1P28360 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC6.95□□□□□ -1.3
MSX1P28360 AC109583.1-201ENST00000432156 268 ntBASIC6.95□□□□□ -1.3
MSX1P28360 ANKRD54P1-201ENST00000433115 471 ntBASIC6.95□□□□□ -1.3
MSX1P28360 AC004470.1-201ENST00000442155 382 ntTSL 5 BASIC6.95□□□□□ -1.3
MSX1P28360 AC092164.1-201ENST00000452212 726 ntTSL 2 BASIC6.95□□□□□ -1.3
MSX1P28360 MRPS21P1-201ENST00000453850 223 ntBASIC6.95□□□□□ -1.3
MSX1P28360 FGF7P3-201ENST00000454645 303 ntBASIC6.95□□□□□ -1.3
MSX1P28360 CMAHP-203ENST00000458373 1101 ntTSL 5 BASIC6.95□□□□□ -1.3
MSX1P28360 LINC00881-201ENST00000467995 589 ntTSL 4 BASIC6.95□□□□□ -1.3
MSX1P28360 RN7SL335P-201ENST00000482790 304 ntBASIC6.95□□□□□ -1.3
MSX1P28360 RN7SL182P-201ENST00000496499 300 ntBASIC6.95□□□□□ -1.3
MSX1P28360 AC010409.2-201ENST00000505780 478 ntBASIC6.95□□□□□ -1.3
MSX1P28360 MRPL49P1-201ENST00000505951 535 ntBASIC6.95□□□□□ -1.3
MSX1P28360 AC131392.1-201ENST00000506490 633 ntBASIC6.95□□□□□ -1.3
MSX1P28360 AC006070.1-201ENST00000508151 193 ntBASIC6.95□□□□□ -1.3
MSX1P28360 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC6.95□□□□□ -1.3
MSX1P28360 AC138866.2-201ENST00000508650 584 ntBASIC6.95□□□□□ -1.3
MSX1P28360 GUSBP9-201ENST00000510138 584 ntBASIC6.95□□□□□ -1.3
MSX1P28360 AC048346.1-201ENST00000510247 144 ntBASIC6.95□□□□□ -1.3
MSX1P28360 LINC01262-201ENST00000513681 879 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC6.95□□□□□ -1.3
MSX1P28360 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC6.95□□□□□ -1.3
MSX1P28360 OR7E87P-201ENST00000532397 929 ntBASIC6.95□□□□□ -1.3
MSX1P28360 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC6.95□□□□□ -1.3
MSX1P28360 TRAV15-201ENST00000556680 249 ntBASIC6.95□□□□□ -1.3
MSX1P28360 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC6.95□□□□□ -1.3
MSX1P28360 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC6.95□□□□□ -1.3
MSX1P28360 KCNMA1-AS1-204ENST00000595702 504 ntTSL 5 BASIC6.95□□□□□ -1.3
MSX1P28360 AC136443.5-201ENST00000603741 370 ntBASIC6.95□□□□□ -1.3
MSX1P28360 AC004853.1-201ENST00000604902 698 ntBASIC6.95□□□□□ -1.3
MSX1P28360 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC6.95□□□□□ -1.3
MSX1P28360 AC244196.4-201ENST00000611787 392 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
MSX1P28360 AC025162.2-201ENST00000619602 560 ntBASIC6.95□□□□□ -1.3
MSX1P28360 AC024940.5-201ENST00000622889 474 ntBASIC6.95□□□□□ -1.3
MSX1P28360 AL353898.2-201ENST00000623000 255 ntBASIC6.95□□□□□ -1.3
MSX1P28360 AC005858.4-201ENST00000623191 700 ntBASIC6.95□□□□□ -1.3
MSX1P28360 AL132796.3-201ENST00000624703 900 ntBASIC6.95□□□□□ -1.3
MSX1P28360 TEX41-265ENST00000627785 704 ntTSL 5 BASIC6.95□□□□□ -1.3
MSX1P28360 AL161891.1-201ENST00000621575 4636 ntBASIC6.95□□□□□ -1.3
MSX1P28360 PARP2-201ENST00000250416 1886 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 AC025040.2-201ENST00000558657 1852 ntBASIC6.95□□□□□ -1.3
MSX1P28360 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 OR2H2-202ENST00000641840 3061 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
MSX1P28360 NUFIP1-201ENST00000379161 3492 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 PARN-201ENST00000341484 2100 ntTSL 2 BASIC6.95□□□□□ -1.3
MSX1P28360 CYSLTR2-202ENST00000614739 1908 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 EPYC-201ENST00000261172 1539 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 VEZF1P1-201ENST00000423931 1541 ntBASIC6.95□□□□□ -1.3
MSX1P28360 JAM3-202ENST00000441717 3363 ntTSL 2 BASIC6.95□□□□□ -1.3
MSX1P28360 CACNB4-269ENST00000638005 4615 ntTSL 2 BASIC6.95□□□□□ -1.3
MSX1P28360 GNG12-201ENST00000370982 4404 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 AL133320.1-201ENST00000621423 2352 ntBASIC6.95□□□□□ -1.3
MSX1P28360 CD46-203ENST00000354848 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC6.95□□□□□ -1.3
MSX1P28360 UG0898H09-202ENST00000623646 7040 ntBASIC6.95□□□□□ -1.3
MSX1P28360 ZNF121-201ENST00000320451 1563 ntAPPRIS P1 TSL 3 BASIC6.95□□□□□ -1.3
MSX1P28360 FPR3-201ENST00000339223 2620 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 KIF4A-201ENST00000374403 4348 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 CCDC30-202ENST00000342022 3098 ntAPPRIS P2 TSL 5 BASIC6.95□□□□□ -1.3
MSX1P28360 DYRK1A-201ENST00000338785 5498 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
MSX1P28360 TMX2-201ENST00000278422 1631 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
MSX1P28360 CBWD6-203ENST00000456520 1608 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
MSX1P28360 ZSCAN9-207ENST00000531979 1601 ntAPPRIS P3 TSL 2 BASIC6.94□□□□□ -1.3
MSX1P28360 ESRRG-221ENST00000493603 5304 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
MSX1P28360 CD160-205ENST00000616463 3388 ntAPPRIS ALT2 TSL 2 BASIC6.94□□□□□ -1.3
MSX1P28360 ZNF235-201ENST00000291182 3188 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
MSX1P28360 OR7D2-203ENST00000642043 3157 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
MSX1P28360 PKP4-AS1-201ENST00000342892 4067 ntTSL 2 BASIC6.94□□□□□ -1.3
MSX1P28360 USP16-204ENST00000399976 2963 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.3
MSX1P28360 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
MSX1P28360 AC133552.3-201ENST00000572236 1869 ntBASIC6.94□□□□□ -1.3
MSX1P28360 AC007731.1-202ENST00000610338 1870 ntTSL 5 BASIC6.94□□□□□ -1.3
MSX1P28360 GPM6A-202ENST00000393658 2821 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
MSX1P28360 SYNPR-204ENST00000460711 2383 ntTSL 2 BASIC6.94□□□□□ -1.3
MSX1P28360 RGS6-205ENST00000406236 1476 ntAPPRIS ALT1 TSL 1 (best) BASIC6.94□□□□□ -1.3
MSX1P28360 SERPINB4-201ENST00000341074 1749 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
MSX1P28360 ELOVL5-207ENST00000542638 2875 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
MSX1P28360 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
MSX1P28360 CUBN-201ENST00000377823 705 ntTSL 3 BASIC6.94□□□□□ -1.3
MSX1P28360 KCNAB1-202ENST00000389634 1119 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
MSX1P28360 RPL5P5-201ENST00000392009 893 ntBASIC6.94□□□□□ -1.3
MSX1P28360 IYD-205ENST00000392256 882 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
MSX1P28360 KRT18P52-201ENST00000404956 846 ntBASIC6.94□□□□□ -1.3
MSX1P28360 GAS8-AS1-201ENST00000408886 435 ntBASIC6.94□□□□□ -1.3
MSX1P28360 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC6.94□□□□□ -1.3
MSX1P28360 RPLP1P10-201ENST00000413972 339 ntBASIC6.94□□□□□ -1.3
MSX1P28360 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC6.94□□□□□ -1.3
MSX1P28360 AL022100.1-202ENST00000421214 548 ntBASIC6.94□□□□□ -1.3
MSX1P28360 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC6.94□□□□□ -1.3
MSX1P28360 AC018630.2-202ENST00000422992 927 ntBASIC6.94□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms