Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A3P25940 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A3P25940 TTC3P1-201ENST00000399586 6081 ntBASIC6.29□□□□□ -1.4
COL5A3P25940 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC6.29□□□□□ -1.4
COL5A3P25940 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A3P25940 ADGRL3-214ENST00000511324 5042 ntTSL 5 BASIC6.29□□□□□ -1.4
COL5A3P25940 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC6.29□□□□□ -1.4
COL5A3P25940 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A3P25940 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
COL5A3P25940 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC6.28□□□□□ -1.4
COL5A3P25940 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC6.28□□□□□ -1.4
COL5A3P25940 SNORD113.2-201ENST00000364166 89 ntBASIC6.28□□□□□ -1.4
COL5A3P25940 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A3P25940 BX276092.6-201ENST00000430476 250 ntBASIC6.28□□□□□ -1.4
COL5A3P25940 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC6.28□□□□□ -1.4
COL5A3P25940 BX276092.8-201ENST00000455722 250 ntBASIC6.28□□□□□ -1.4
COL5A3P25940 snoU13.29-201ENST00000459370 104 ntBASIC6.28□□□□□ -1.4
COL5A3P25940 SCARNA9-201ENST00000530422 353 ntBASIC6.28□□□□□ -1.4
COL5A3P25940 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A3P25940 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC6.28□□□□□ -1.4
COL5A3P25940 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC6.28□□□□□ -1.4
COL5A3P25940 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC6.28□□□□□ -1.4
COL5A3P25940 AC125494.2-201ENST00000602431 657 ntBASIC6.28□□□□□ -1.4
COL5A3P25940 MIR6853-201ENST00000619642 74 ntBASIC6.28□□□□□ -1.4
COL5A3P25940 AC091046.3-201ENST00000631455 1574 ntBASIC6.28□□□□□ -1.4
COL5A3P25940 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A3P25940 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A3P25940 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
COL5A3P25940 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A3P25940 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A3P25940 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC6.28□□□□□ -1.4
COL5A3P25940 AC004076.2-201ENST00000620532 3323 ntBASIC6.28□□□□□ -1.4
COL5A3P25940 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC6.28□□□□□ -1.4
COL5A3P25940 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC6.28□□□□□ -1.4
COL5A3P25940 GON4L-217ENST00000615926 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A3P25940 OFD1P8Y-201ENST00000449148 1433 ntBASIC6.28□□□□□ -1.4
COL5A3P25940 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC6.28□□□□□ -1.4
COL5A3P25940 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A3P25940 AC007382.1-201ENST00000624376 2618 ntBASIC6.28□□□□□ -1.4
COL5A3P25940 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
COL5A3P25940 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC6.28□□□□□ -1.4
COL5A3P25940 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC6.28□□□□□ -1.4
COL5A3P25940 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC6.28□□□□□ -1.4
COL5A3P25940 AC103987.1-201ENST00000473394 348 ntBASIC6.28□□□□□ -1.4
COL5A3P25940 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC6.28□□□□□ -1.4
COL5A3P25940 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC6.28□□□□□ -1.4
COL5A3P25940 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC6.28□□□□□ -1.4
COL5A3P25940 GTF2IP11-201ENST00000526931 420 ntBASIC6.28□□□□□ -1.4
COL5A3P25940 OR4A6P-201ENST00000534364 970 ntBASIC6.28□□□□□ -1.4
COL5A3P25940 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A3P25940 RN7SL802P-201ENST00000577858 299 ntBASIC6.28□□□□□ -1.4
COL5A3P25940 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A3P25940 AC021106.3-201ENST00000623925 531 ntBASIC6.28□□□□□ -1.4
COL5A3P25940 AC016717.3-201ENST00000624730 554 ntBASIC6.28□□□□□ -1.4
COL5A3P25940 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC6.27□□□□□ -1.4
COL5A3P25940 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL5A3P25940 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
COL5A3P25940 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
COL5A3P25940 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
COL5A3P25940 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC6.27□□□□□ -1.41
COL5A3P25940 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.27□□□□□ -1.41
COL5A3P25940 AC138907.8-201ENST00000623981 2256 ntBASIC6.27□□□□□ -1.41
COL5A3P25940 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
COL5A3P25940 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC6.27□□□□□ -1.41
COL5A3P25940 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL5A3P25940 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
COL5A3P25940 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC6.27□□□□□ -1.41
COL5A3P25940 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL5A3P25940 AC092681.1-201ENST00000297369 291 ntBASIC6.27□□□□□ -1.41
COL5A3P25940 AL390316.1-201ENST00000406279 553 ntBASIC6.27□□□□□ -1.41
COL5A3P25940 U3.32-201ENST00000408116 212 ntBASIC6.27□□□□□ -1.41
COL5A3P25940 AC073143.1-201ENST00000436316 395 ntBASIC6.27□□□□□ -1.41
COL5A3P25940 AC016831.4-201ENST00000438302 307 ntBASIC6.27□□□□□ -1.41
COL5A3P25940 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC6.27□□□□□ -1.41
COL5A3P25940 RN7SKP67-201ENST00000515905 235 ntBASIC6.27□□□□□ -1.41
COL5A3P25940 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC6.27□□□□□ -1.41
COL5A3P25940 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
COL5A3P25940 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC6.27□□□□□ -1.41
COL5A3P25940 HID1-AS1-201ENST00000577295 815 ntTSL 2 BASIC6.27□□□□□ -1.41
COL5A3P25940 AL445423.1-201ENST00000609941 536 ntBASIC6.27□□□□□ -1.41
COL5A3P25940 IPO5-229ENST00000631030 192 ntTSL 5 BASIC6.27□□□□□ -1.41
COL5A3P25940 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
COL5A3P25940 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
COL5A3P25940 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC6.27□□□□□ -1.41
COL5A3P25940 ANK2-203ENST00000394537 6313 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL5A3P25940 SPA17-204ENST00000532692 4949 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL5A3P25940 AL442639.1-201ENST00000625030 1899 ntBASIC6.26□□□□□ -1.41
COL5A3P25940 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC6.26□□□□□ -1.41
COL5A3P25940 CCT8P1-201ENST00000413611 1657 ntBASIC6.26□□□□□ -1.41
COL5A3P25940 CCDC162P-202ENST00000368966 6751 ntBASIC6.26□□□□□ -1.41
COL5A3P25940 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL5A3P25940 SNORA70.10-201ENST00000384515 134 ntBASIC6.26□□□□□ -1.41
COL5A3P25940 RNA5SP397-201ENST00000391323 118 ntBASIC6.26□□□□□ -1.41
COL5A3P25940 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC6.26□□□□□ -1.41
COL5A3P25940 TBCAP2-201ENST00000416175 326 ntBASIC6.26□□□□□ -1.41
COL5A3P25940 TRIM60P9Y-201ENST00000438459 816 ntBASIC6.26□□□□□ -1.41
COL5A3P25940 SCAND3P1-201ENST00000439854 1060 ntBASIC6.26□□□□□ -1.41
COL5A3P25940 TRIM60P11Y-201ENST00000445313 801 ntBASIC6.26□□□□□ -1.41
COL5A3P25940 snoU13.1-201ENST00000459157 104 ntBASIC6.26□□□□□ -1.41
COL5A3P25940 AC022133.1-201ENST00000490961 571 ntBASIC6.26□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms