Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
BDNFP23560 AC083843.2-201ENST00000568248 6253 ntBASIC6.02□□□□□ -1.45
BDNFP23560 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC6.02□□□□□ -1.45
BDNFP23560 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
BDNFP23560 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC6.02□□□□□ -1.45
BDNFP23560 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
BDNFP23560 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
BDNFP23560 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
BDNFP23560 RNA5SP131-201ENST00000365452 119 ntBASIC6.02□□□□□ -1.45
BDNFP23560 RNA5SP30-201ENST00000365552 115 ntBASIC6.02□□□□□ -1.45
BDNFP23560 U3.25-201ENST00000391209 220 ntBASIC6.02□□□□□ -1.45
BDNFP23560 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC6.02□□□□□ -1.45
BDNFP23560 RPS6P23-201ENST00000413224 722 ntBASIC6.02□□□□□ -1.45
BDNFP23560 RPS26P38-201ENST00000414476 348 ntBASIC6.02□□□□□ -1.45
BDNFP23560 TNPO1P1-201ENST00000423641 1138 ntBASIC6.02□□□□□ -1.45
BDNFP23560 CRIP1P1-201ENST00000427567 185 ntBASIC6.02□□□□□ -1.45
BDNFP23560 USP24P1-201ENST00000433802 779 ntBASIC6.02□□□□□ -1.45
BDNFP23560 RPS20P1-201ENST00000434853 354 ntBASIC6.02□□□□□ -1.45
BDNFP23560 AL390879.1-201ENST00000439143 386 ntBASIC6.02□□□□□ -1.45
BDNFP23560 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC6.02□□□□□ -1.45
BDNFP23560 AL136038.1-201ENST00000497246 351 ntBASIC6.02□□□□□ -1.45
BDNFP23560 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC6.02□□□□□ -1.45
BDNFP23560 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC6.02□□□□□ -1.45
BDNFP23560 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC6.02□□□□□ -1.45
BDNFP23560 AC002069.2-201ENST00000603580 883 ntBASIC6.02□□□□□ -1.45
BDNFP23560 MIR6768-201ENST00000610734 72 ntBASIC6.02□□□□□ -1.45
BDNFP23560 MIR6886-201ENST00000619864 61 ntBASIC6.02□□□□□ -1.45
BDNFP23560 UBA3-213ENST00000631029 123 ntTSL 5 BASIC6.02□□□□□ -1.45
BDNFP23560 AP000473.2-201ENST00000602659 1537 ntBASIC6.02□□□□□ -1.45
BDNFP23560 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
BDNFP23560 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
BDNFP23560 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC6.02□□□□□ -1.45
BDNFP23560 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC6.02□□□□□ -1.45
BDNFP23560 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC6.02□□□□□ -1.45
BDNFP23560 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
BDNFP23560 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
BDNFP23560 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
BDNFP23560 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
BDNFP23560 AC104118.1-201ENST00000607625 1589 ntBASIC6.01□□□□□ -1.45
BDNFP23560 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
BDNFP23560 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
BDNFP23560 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC6.01□□□□□ -1.45
BDNFP23560 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
BDNFP23560 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC6.01□□□□□ -1.45
BDNFP23560 CR848007.2-201ENST00000424918 787 ntBASIC6.01□□□□□ -1.45
BDNFP23560 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC6.01□□□□□ -1.45
BDNFP23560 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC6.01□□□□□ -1.45
BDNFP23560 AL121776.1-201ENST00000429337 372 ntBASIC6.01□□□□□ -1.45
BDNFP23560 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC6.01□□□□□ -1.45
BDNFP23560 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC6.01□□□□□ -1.45
BDNFP23560 AP000547.1-201ENST00000454360 617 ntBASIC6.01□□□□□ -1.45
BDNFP23560 CCDC75P1-201ENST00000469247 791 ntBASIC6.01□□□□□ -1.45
BDNFP23560 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
BDNFP23560 RN7SL466P-201ENST00000497546 295 ntBASIC6.01□□□□□ -1.45
BDNFP23560 RN7SL284P-201ENST00000498823 275 ntBASIC6.01□□□□□ -1.45
BDNFP23560 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC6.01□□□□□ -1.45
BDNFP23560 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC6.01□□□□□ -1.45
BDNFP23560 RPL7L1P4-201ENST00000513004 707 ntBASIC6.01□□□□□ -1.45
BDNFP23560 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC6.01□□□□□ -1.45
BDNFP23560 SMARCE1P4-201ENST00000523647 241 ntBASIC6.01□□□□□ -1.45
BDNFP23560 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC6.01□□□□□ -1.45
BDNFP23560 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC6.01□□□□□ -1.45
BDNFP23560 AC126615.2-201ENST00000553003 515 ntBASIC6.01□□□□□ -1.45
BDNFP23560 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC6.01□□□□□ -1.45
BDNFP23560 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC6.01□□□□□ -1.45
BDNFP23560 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC6.01□□□□□ -1.45
BDNFP23560 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC6.01□□□□□ -1.45
BDNFP23560 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC6.01□□□□□ -1.45
BDNFP23560 AL513327.3-201ENST00000602618 469 ntBASIC6.01□□□□□ -1.45
BDNFP23560 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC6.01□□□□□ -1.45
BDNFP23560 AC242628.1-201ENST00000606810 391 ntBASIC6.01□□□□□ -1.45
BDNFP23560 AC012557.1-201ENST00000607115 611 ntBASIC6.01□□□□□ -1.45
BDNFP23560 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
BDNFP23560 AC011933.2-201ENST00000578539 2790 ntBASIC6.01□□□□□ -1.45
BDNFP23560 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
BDNFP23560 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC6.01□□□□□ -1.45
BDNFP23560 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
BDNFP23560 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
BDNFP23560 ASNSP1-201ENST00000518311 1939 ntBASIC6.01□□□□□ -1.45
BDNFP23560 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC6.01□□□□□ -1.45
BDNFP23560 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
BDNFP23560 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
BDNFP23560 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC6□□□□□ -1.45
BDNFP23560 AC087516.1-201ENST00000561236 2428 ntBASIC6□□□□□ -1.45
BDNFP23560 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
BDNFP23560 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
BDNFP23560 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
BDNFP23560 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
BDNFP23560 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
BDNFP23560 AL603750.1-201ENST00000624216 1717 ntBASIC6□□□□□ -1.45
BDNFP23560 RAD1P1-201ENST00000231383 813 ntBASIC6□□□□□ -1.45
BDNFP23560 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC6□□□□□ -1.45
BDNFP23560 GNG5P2-201ENST00000372054 207 ntBASIC6□□□□□ -1.45
BDNFP23560 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC6□□□□□ -1.45
BDNFP23560 RNA5SP91-201ENST00000390902 119 ntBASIC6□□□□□ -1.45
BDNFP23560 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
BDNFP23560 RN7SKP229-201ENST00000410465 302 ntBASIC6□□□□□ -1.45
BDNFP23560 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC6□□□□□ -1.45
BDNFP23560 AC073410.1-201ENST00000435125 589 ntBASIC6□□□□□ -1.45
BDNFP23560 AL450996.1-201ENST00000445574 1202 ntBASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms