Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC4.8□□□□□ -1.64
SPTA1P02549 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
SPTA1P02549 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC4.8□□□□□ -1.64
SPTA1P02549 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SPTA1P02549 SNORA71.3-201ENST00000362582 128 ntBASIC4.8□□□□□ -1.64
SPTA1P02549 HMGB3P7-201ENST00000400214 611 ntBASIC4.8□□□□□ -1.64
SPTA1P02549 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SPTA1P02549 AL596266.1-201ENST00000448132 400 ntBASIC4.8□□□□□ -1.64
SPTA1P02549 RNA5SP43-201ENST00000516559 110 ntBASIC4.8□□□□□ -1.64
SPTA1P02549 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC4.8□□□□□ -1.64
SPTA1P02549 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC4.8□□□□□ -1.64
SPTA1P02549 SCARNA9-201ENST00000530422 353 ntBASIC4.8□□□□□ -1.64
SPTA1P02549 MIR3124-201ENST00000582636 67 ntBASIC4.8□□□□□ -1.64
SPTA1P02549 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.8□□□□□ -1.64
SPTA1P02549 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC4.8□□□□□ -1.64
SPTA1P02549 AC074101.1-201ENST00000637861 241 ntBASIC4.8□□□□□ -1.64
SPTA1P02549 LUC7L2-201ENST00000263545 2287 ntTSL 5 BASIC4.8□□□□□ -1.64
SPTA1P02549 AC007998.4-201ENST00000612496 2533 ntBASIC4.8□□□□□ -1.64
SPTA1P02549 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
SPTA1P02549 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC4.8□□□□□ -1.64
SPTA1P02549 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SPTA1P02549 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC4.8□□□□□ -1.64
SPTA1P02549 AL353763.1-201ENST00000624467 1628 ntBASIC4.8□□□□□ -1.64
SPTA1P02549 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SPTA1P02549 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.8□□□□□ -1.64
SPTA1P02549 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.8□□□□□ -1.64
SPTA1P02549 AC119674.1-213ENST00000641177 1386 ntBASIC4.8□□□□□ -1.64
SPTA1P02549 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
SPTA1P02549 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SPTA1P02549 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC4.8□□□□□ -1.64
SPTA1P02549 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC4.8□□□□□ -1.64
SPTA1P02549 RPL32P23-201ENST00000397237 405 ntBASIC4.8□□□□□ -1.64
SPTA1P02549 RNA5SP113-201ENST00000410486 84 ntBASIC4.8□□□□□ -1.64
SPTA1P02549 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.8□□□□□ -1.64
SPTA1P02549 AC007562.1-201ENST00000421819 517 ntBASIC4.8□□□□□ -1.64
SPTA1P02549 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SPTA1P02549 AC023274.2-201ENST00000445264 521 ntBASIC4.8□□□□□ -1.64
SPTA1P02549 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC4.8□□□□□ -1.64
SPTA1P02549 AC007224.1-201ENST00000564410 144 ntBASIC4.8□□□□□ -1.64
SPTA1P02549 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC4.8□□□□□ -1.64
SPTA1P02549 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.8□□□□□ -1.64
SPTA1P02549 VN1R85P-201ENST00000601587 426 ntBASIC4.8□□□□□ -1.64
SPTA1P02549 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC4.8□□□□□ -1.64
SPTA1P02549 PDCD6IPP1-202ENST00000622242 1064 ntBASIC4.8□□□□□ -1.64
SPTA1P02549 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC4.8□□□□□ -1.64
SPTA1P02549 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
SPTA1P02549 AC006600.2-201ENST00000624834 2506 ntBASIC4.79□□□□□ -1.64
SPTA1P02549 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SPTA1P02549 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SPTA1P02549 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SPTA1P02549 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SPTA1P02549 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC4.79□□□□□ -1.64
SPTA1P02549 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SPTA1P02549 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC4.79□□□□□ -1.64
SPTA1P02549 ATP5A1P1-201ENST00000454088 1321 ntBASIC4.79□□□□□ -1.64
SPTA1P02549 AC003973.3-201ENST00000624863 2822 ntBASIC4.79□□□□□ -1.64
SPTA1P02549 OR52I1-202ENST00000530443 2961 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
SPTA1P02549 AL121886.1-201ENST00000358609 435 ntBASIC4.79□□□□□ -1.64
SPTA1P02549 RNA5SP326-201ENST00000363209 110 ntBASIC4.79□□□□□ -1.64
SPTA1P02549 RNU6-761P-201ENST00000384148 107 ntBASIC4.79□□□□□ -1.64
SPTA1P02549 U3.22-201ENST00000391120 215 ntBASIC4.79□□□□□ -1.64
SPTA1P02549 AP001324.1-201ENST00000428553 399 ntBASIC4.79□□□□□ -1.64
SPTA1P02549 AL445687.2-201ENST00000458156 728 ntBASIC4.79□□□□□ -1.64
SPTA1P02549 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
SPTA1P02549 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SPTA1P02549 GAPDHP56-201ENST00000506031 988 ntBASIC4.79□□□□□ -1.64
SPTA1P02549 MRPS33P2-201ENST00000507850 322 ntBASIC4.79□□□□□ -1.64
SPTA1P02549 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC4.79□□□□□ -1.64
SPTA1P02549 MIR4737-201ENST00000583979 81 ntBASIC4.79□□□□□ -1.64
SPTA1P02549 AC011477.5-201ENST00000586571 259 ntBASIC4.79□□□□□ -1.64
SPTA1P02549 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC4.79□□□□□ -1.64
SPTA1P02549 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SPTA1P02549 HMGB4-204ENST00000522796 2505 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
SPTA1P02549 AC097063.1-201ENST00000426714 1797 ntBASIC4.79□□□□□ -1.64
SPTA1P02549 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
SPTA1P02549 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SPTA1P02549 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SPTA1P02549 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SPTA1P02549 AC092070.2-203ENST00000598377 3644 ntBASIC4.79□□□□□ -1.64
SPTA1P02549 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.79□□□□□ -1.64
SPTA1P02549 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SPTA1P02549 AC012618.3-201ENST00000415793 2042 ntTSL 5 BASIC4.79□□□□□ -1.64
SPTA1P02549 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SPTA1P02549 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
SPTA1P02549 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
SPTA1P02549 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
SPTA1P02549 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SPTA1P02549 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
SPTA1P02549 BX284613.1-201ENST00000452221 1641 ntBASIC4.79□□□□□ -1.64
SPTA1P02549 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.78□□□□□ -1.64
SPTA1P02549 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SPTA1P02549 RN7SKP280-201ENST00000364196 304 ntBASIC4.78□□□□□ -1.64
SPTA1P02549 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC4.78□□□□□ -1.64
SPTA1P02549 AC007568.1-201ENST00000422912 471 ntBASIC4.78□□□□□ -1.64
SPTA1P02549 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC4.78□□□□□ -1.64
SPTA1P02549 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC4.78□□□□□ -1.64
SPTA1P02549 NDUFA5P8-201ENST00000449019 346 ntBASIC4.78□□□□□ -1.64
SPTA1P02549 AL451063.1-201ENST00000450164 1133 ntBASIC4.78□□□□□ -1.64
SPTA1P02549 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC4.78□□□□□ -1.64
SPTA1P02549 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms