Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
SDCBPO00560 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
SDCBPO00560 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SDCBPO00560 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SDCBPO00560 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SDCBPO00560 RNU1-77P-201ENST00000390868 162 ntBASIC4.36□□□□□ -1.71
SDCBPO00560 SNORA17A-201ENST00000391185 133 ntBASIC4.36□□□□□ -1.71
SDCBPO00560 AL078599.1-201ENST00000402075 293 ntBASIC4.36□□□□□ -1.71
SDCBPO00560 AL390316.1-201ENST00000406279 553 ntBASIC4.36□□□□□ -1.71
SDCBPO00560 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
SDCBPO00560 SNORA11.5-201ENST00000408163 128 ntBASIC4.36□□□□□ -1.71
SDCBPO00560 RNU6ATAC18P-201ENST00000408413 101 ntBASIC4.36□□□□□ -1.71
SDCBPO00560 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC4.36□□□□□ -1.71
SDCBPO00560 AL133325.1-201ENST00000421090 382 ntBASIC4.36□□□□□ -1.71
SDCBPO00560 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC4.36□□□□□ -1.71
SDCBPO00560 FAM96AP1-201ENST00000430879 482 ntBASIC4.36□□□□□ -1.71
SDCBPO00560 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC4.36□□□□□ -1.71
SDCBPO00560 AP000281.1-201ENST00000444036 316 ntBASIC4.36□□□□□ -1.71
SDCBPO00560 AC104634.1-201ENST00000452720 462 ntBASIC4.36□□□□□ -1.71
SDCBPO00560 RPS27AP2-201ENST00000457576 465 ntBASIC4.36□□□□□ -1.71
SDCBPO00560 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC4.36□□□□□ -1.71
SDCBPO00560 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC4.36□□□□□ -1.71
SDCBPO00560 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC4.36□□□□□ -1.71
SDCBPO00560 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC4.36□□□□□ -1.71
SDCBPO00560 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC4.36□□□□□ -1.71
SDCBPO00560 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC4.36□□□□□ -1.71
SDCBPO00560 BNIP3P1-201ENST00000547295 580 ntBASIC4.36□□□□□ -1.71
SDCBPO00560 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC4.36□□□□□ -1.71
SDCBPO00560 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
SDCBPO00560 Z95327.3-201ENST00000610385 572 ntBASIC4.36□□□□□ -1.71
SDCBPO00560 AC108359.1-201ENST00000616451 1211 ntBASIC4.36□□□□□ -1.71
SDCBPO00560 AC241377.1-201ENST00000619797 406 ntBASIC4.36□□□□□ -1.71
SDCBPO00560 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC4.36□□□□□ -1.71
SDCBPO00560 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC4.36□□□□□ -1.71
SDCBPO00560 SNORA17.5-201ENST00000630429 132 ntBASIC4.36□□□□□ -1.71
SDCBPO00560 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SDCBPO00560 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.36□□□□□ -1.71
SDCBPO00560 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SDCBPO00560 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
SDCBPO00560 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
SDCBPO00560 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SDCBPO00560 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SDCBPO00560 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
SDCBPO00560 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SDCBPO00560 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
SDCBPO00560 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
SDCBPO00560 AMELX-201ENST00000348912 737 ntTSL 5 BASIC4.35□□□□□ -1.71
SDCBPO00560 RN7SKP74-201ENST00000362849 309 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 OOSP1-201ENST00000398992 1270 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 RPL10P10-201ENST00000403509 664 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 U3.32-201ENST00000408116 212 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 RN7SKP293-201ENST00000411389 296 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 CDY17P-201ENST00000414121 1282 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 AC017078.1-201ENST00000416146 368 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC4.35□□□□□ -1.71
SDCBPO00560 AC079807.1-201ENST00000429993 481 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC4.35□□□□□ -1.71
SDCBPO00560 AL161722.2-201ENST00000434731 981 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC4.35□□□□□ -1.71
SDCBPO00560 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC4.35□□□□□ -1.71
SDCBPO00560 EIF4A1P6-201ENST00000448133 1210 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 RPL7P45-201ENST00000455851 743 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 TPT1P1-201ENST00000458495 518 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 RPSAP39-201ENST00000467439 883 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 RN7SL717P-201ENST00000478343 297 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 RN7SL547P-201ENST00000490793 290 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 HMGB3P16-201ENST00000508037 287 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 AC006427.1-201ENST00000514359 712 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC4.35□□□□□ -1.71
SDCBPO00560 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.35□□□□□ -1.71
SDCBPO00560 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
SDCBPO00560 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC4.35□□□□□ -1.71
SDCBPO00560 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC4.35□□□□□ -1.71
SDCBPO00560 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC4.35□□□□□ -1.71
SDCBPO00560 OOSP1P2-201ENST00000579644 351 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 MIR3614-201ENST00000581261 86 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC4.35□□□□□ -1.71
SDCBPO00560 MIR3936-201ENST00000584304 110 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC4.35□□□□□ -1.71
SDCBPO00560 SUGT1P3-202ENST00000604259 383 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 BNIP3P35-201ENST00000604530 490 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 AC018695.5-201ENST00000605872 315 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC4.35□□□□□ -1.71
SDCBPO00560 AC004477.3-201ENST00000614061 590 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 AC005840.5-201ENST00000619166 599 ntBASIC4.35□□□□□ -1.71
SDCBPO00560 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC4.35□□□□□ -1.71
SDCBPO00560 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
SDCBPO00560 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SDCBPO00560 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC4.35□□□□□ -1.71
SDCBPO00560 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.35□□□□□ -1.71
SDCBPO00560 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
SDCBPO00560 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SDCBPO00560 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
SDCBPO00560 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.34□□□□□ -1.71
SDCBPO00560 STX3-208ENST00000641815 3236 ntBASIC4.34□□□□□ -1.71
SDCBPO00560 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SDCBPO00560 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SDCBPO00560 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
SDCBPO00560 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SDCBPO00560 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 169.4 ms