Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
CHMP4AQ9BY43 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
CHMP4AQ9BY43 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC7.3□□□□□ -1.24
CHMP4AQ9BY43 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC7.3□□□□□ -1.24
CHMP4AQ9BY43 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC7.3□□□□□ -1.24
CHMP4AQ9BY43 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC7.3□□□□□ -1.24
CHMP4AQ9BY43 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 AC017002.4-201ENST00000604721 1525 ntBASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 RNU4-2-201ENST00000365668 141 ntBASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 RNU1-136P-201ENST00000384181 164 ntBASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 AC087752.1-201ENST00000391360 558 ntBASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 CHMP1B2P-201ENST00000399581 597 ntBASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 AL512430.2-201ENST00000406786 339 ntBASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 EEF1A1P29-201ENST00000416082 1096 ntBASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 NAP1L4P2-201ENST00000425958 899 ntBASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 RPS26P47-201ENST00000427219 348 ntBASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 AC073909.1-201ENST00000447112 999 ntBASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 AP002345.1-201ENST00000456493 928 ntBASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 METTL15P1-201ENST00000481421 1045 ntBASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 AC021087.2-201ENST00000504656 1203 ntBASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 AC093591.2-201ENST00000565254 3843 ntBASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 AC020978.7-201ENST00000575953 1187 ntBASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 SS18L2P2-201ENST00000583960 235 ntBASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 AP001267.4-201ENST00000602598 545 ntBASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 AC011472.4-201ENST00000615848 491 ntBASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 AC096656.1-201ENST00000623826 1364 ntBASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 BCORP1-203ENST00000513194 5093 ntBASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC7.29□□□□□ -1.24
CHMP4AQ9BY43 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 AL359715.4-201ENST00000606629 1436 ntBASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 RNU6-532P-201ENST00000384318 107 ntBASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 MIR551A-201ENST00000385042 96 ntBASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 MIR323B-201ENST00000385269 82 ntBASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 AL158073.1-201ENST00000426848 1104 ntBASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 RNU6-1218P-201ENST00000458990 108 ntBASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 RPS7P6-201ENST00000485777 579 ntBASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 MINCR-206ENST00000524335 499 ntTSL 2 BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 IGLV3-30-201ENST00000524362 298 ntBASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 AL049870.4-201ENST00000555741 486 ntBASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 AL589674.2-201ENST00000604304 337 ntBASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 AC007423.1-201ENST00000605009 627 ntBASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 AC104695.2-201ENST00000605056 775 ntBASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 FAM72A-208ENST00000607379 1139 ntBASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 AP003497.2-201ENST00000624220 967 ntBASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
CHMP4AQ9BY43 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC7.27□□□□□ -1.24
CHMP4AQ9BY43 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC7.27□□□□□ -1.24
CHMP4AQ9BY43 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC7.27□□□□□ -1.24
CHMP4AQ9BY43 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms