Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC090527.3-201ENST00000619041 548 ntBASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 AC136475.10-201ENST00000620253 385 ntBASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 AC140479.4-205ENST00000636339 820 ntBASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 TPTEP1-208ENST00000636884 213 ntBASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 SLC8A3-208ENST00000533541 3409 ntTSL 2 BASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 AC006019.2-201ENST00000451116 3044 ntTSL 2 BASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 AC020978.8-201ENST00000571975 3022 ntBASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 CAP1-206ENST00000372805 2217 ntAPPRIS P3 TSL 1 (best) BASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 KPNA6-201ENST00000373625 7378 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 WDCP-202ENST00000406895 3700 ntAPPRIS ALT2 TSL 1 (best) BASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 AC135352.1-201ENST00000506173 1418 ntBASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 AC114786.1-201ENST00000512892 1415 ntBASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 DLG2-211ENST00000426717 5927 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 CD200R1-202ENST00000308611 2299 ntAPPRIS P4 TSL 1 (best) BASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 CYP4F30P-203ENST00000438109 2250 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 LMO3-208ENST00000441439 3515 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 RNASEL-201ENST00000367559 4238 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 AF121898.1-201ENST00000440763 1860 ntTSL 5 BASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 BRAFP1-201ENST00000445336 2703 ntBASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 NXF4-202ENST00000416098 1465 ntBASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 ARF4-209ENST00000496292 1467 ntTSL 5 BASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 SPRY1-201ENST00000339241 2348 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 FAM13A-AS1-202ENST00000511543 2453 ntTSL 2 BASIC7.49□□□□□ -1.21
NPAS3Q8IXF0 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 USP3-201ENST00000268049 5311 ntTSL 5 BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 COL21A1-203ENST00000370819 4094 ntAPPRIS ALT1 TSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 KPNA1-201ENST00000344337 6830 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 DZANK1-203ENST00000357236 3739 ntAPPRIS ALT2 TSL 5 BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 UBAP2L-203ENST00000361546 3864 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AL512662.1-201ENST00000624850 2251 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AMOT-204ENST00000371962 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 ST18-201ENST00000276480 6187 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 SCGB1A1-201ENST00000278282 441 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 FOXP2-201ENST00000350908 2638 ntAPPRIS P2 TSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 PDE1A-201ENST00000351439 2338 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 SNORA4.1-201ENST00000364263 144 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 SNORD42.2-201ENST00000365570 69 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 NOX1-203ENST00000372964 661 ntTSL 2 BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 MIR191-201ENST00000384873 92 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 PSMA6P1-201ENST00000400275 741 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AL355375.1-201ENST00000405686 392 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 RPL17P12-201ENST00000413391 526 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 JKAMPP1-201ENST00000413804 919 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AL157884.1-201ENST00000424561 454 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 FGF12-202ENST00000430714 603 ntTSL 2 BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 RPL3P11-201ENST00000434028 1146 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 EMC3-AS1-205ENST00000438698 534 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AC083855.1-201ENST00000440041 258 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 KCNK2-203ENST00000444842 3379 ntAPPRIS ALT1 TSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AL672138.1-201ENST00000450604 1015 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 RN7SL325P-201ENST00000460434 283 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AC040975.1-201ENST00000472104 316 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 GPX6-202ENST00000474923 716 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 RN7SL502P-201ENST00000481857 290 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AL117692.1-201ENST00000494283 713 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AC103851.1-201ENST00000506833 274 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 CASC11-203ENST00000519071 791 ntTSL 3 BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 IGJP1-201ENST00000522682 475 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AP003122.3-201ENST00000526316 255 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AC004825.1-201ENST00000555068 586 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AC040162.2-201ENST00000573092 157 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 SSX2B-202ENST00000596480 1291 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AC009220.3-201ENST00000604318 586 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 STMN1P1-201ENST00000617809 440 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 U4.1-201ENST00000620349 87 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AC009268.2-201ENST00000621925 457 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 AC018692.2-201ENST00000624130 348 ntBASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 B3GALT1-201ENST00000392690 5094 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 CRB1-202ENST00000367399 3885 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 ASPH-209ENST00000517903 2658 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 OR2T6-202ENST00000641644 4670 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 LINC00310-204ENST00000430922 2086 ntTSL 2 BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 MAS1-201ENST00000252660 9841 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 CD2-202ENST00000369478 1609 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 KIFAP3-203ENST00000367767 2718 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 SLC26A5-206ENST00000393727 2270 ntAPPRIS ALT1 TSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 PDE4DIP-205ENST00000369354 8262 ntAPPRIS ALT2 TSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
NPAS3Q8IXF0 OLR1-201ENST00000309539 2462 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
NPAS3Q8IXF0 KLRD1-201ENST00000336164 3258 ntAPPRIS P4 TSL 1 (best) BASIC7.47□□□□□ -1.21
NPAS3Q8IXF0 LMO7-205ENST00000377534 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC7.47□□□□□ -1.21
NPAS3Q8IXF0 PCDH15-226ENST00000613657 6329 ntAPPRIS ALT2 TSL 5 BASIC7.47□□□□□ -1.21
NPAS3Q8IXF0 AC023818.2-201ENST00000623817 2304 ntBASIC7.47□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms