Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC010306.1-201ENST00000523223 1117 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 OR10V3P-201ENST00000525712 725 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 AP000648.1-201ENST00000529682 397 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC6.18□□□□□ -1.42
USP39Q53GS9 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC6.18□□□□□ -1.42
USP39Q53GS9 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
USP39Q53GS9 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
USP39Q53GS9 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC6.18□□□□□ -1.42
USP39Q53GS9 WDR61-205ENST00000558459 884 ntTSL 3 BASIC6.18□□□□□ -1.42
USP39Q53GS9 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC6.18□□□□□ -1.42
USP39Q53GS9 AC009120.3-201ENST00000563335 499 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC6.18□□□□□ -1.42
USP39Q53GS9 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC6.18□□□□□ -1.42
USP39Q53GS9 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC6.18□□□□□ -1.42
USP39Q53GS9 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC6.18□□□□□ -1.42
USP39Q53GS9 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC6.18□□□□□ -1.42
USP39Q53GS9 AC084373.1-201ENST00000603311 235 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 AC004987.4-201ENST00000603383 338 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 AC024589.2-201ENST00000605642 1294 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 AL031601.1-201ENST00000605702 394 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 AL591167.1-201ENST00000607321 456 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC6.18□□□□□ -1.42
USP39Q53GS9 AL121895.2-201ENST00000619558 447 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC6.18□□□□□ -1.42
USP39Q53GS9 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC6.18□□□□□ -1.42
USP39Q53GS9 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
USP39Q53GS9 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
USP39Q53GS9 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
USP39Q53GS9 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
USP39Q53GS9 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
USP39Q53GS9 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC6.18□□□□□ -1.42
USP39Q53GS9 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC6.18□□□□□ -1.42
USP39Q53GS9 NEPNP-201ENST00000404786 1371 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
USP39Q53GS9 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
USP39Q53GS9 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
USP39Q53GS9 RBPJP7-201ENST00000442803 1447 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 RBPJP5-201ENST00000449433 1447 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
USP39Q53GS9 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
USP39Q53GS9 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC6.17□□□□□ -1.42
USP39Q53GS9 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
USP39Q53GS9 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
USP39Q53GS9 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
USP39Q53GS9 BIN2P1-201ENST00000504996 1530 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC6.17□□□□□ -1.42
USP39Q53GS9 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
USP39Q53GS9 RNA5SP251-201ENST00000410614 137 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 MTND4LP17-201ENST00000414607 293 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC6.17□□□□□ -1.42
USP39Q53GS9 OR5M12P-201ENST00000423388 929 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC6.17□□□□□ -1.42
USP39Q53GS9 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
USP39Q53GS9 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC6.17□□□□□ -1.42
USP39Q53GS9 TRIM60P9Y-201ENST00000438459 816 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 KRTAP8-2P-201ENST00000440620 186 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 AC016908.1-201ENST00000442571 1219 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 BMS1P10-201ENST00000443754 1120 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 TRIM60P11Y-201ENST00000445313 801 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 GAS5-218ENST00000448718 565 ntTSL 2 BASIC6.17□□□□□ -1.42
USP39Q53GS9 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
USP39Q53GS9 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
USP39Q53GS9 AC093663.2-201ENST00000484625 313 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 AC134050.1-201ENST00000495088 933 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 SUMO2P4-201ENST00000504193 276 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 AC008638.1-201ENST00000506035 866 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 AC108157.1-201ENST00000510511 539 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC6.17□□□□□ -1.42
USP39Q53GS9 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC6.17□□□□□ -1.42
USP39Q53GS9 AC110775.1-201ENST00000513721 462 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 ATP5LP3-201ENST00000514223 304 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC6.17□□□□□ -1.42
USP39Q53GS9 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC6.17□□□□□ -1.42
USP39Q53GS9 LRRC6P1-201ENST00000532188 885 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC6.17□□□□□ -1.42
USP39Q53GS9 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
USP39Q53GS9 GCSHP4-201ENST00000538792 439 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC6.17□□□□□ -1.42
USP39Q53GS9 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC6.17□□□□□ -1.42
USP39Q53GS9 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC6.17□□□□□ -1.42
USP39Q53GS9 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.17□□□□□ -1.42
USP39Q53GS9 AC027455.1-201ENST00000574104 594 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 MIR3176-201ENST00000582210 90 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 SNX6P1-201ENST00000601728 1224 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC6.17□□□□□ -1.42
USP39Q53GS9 AC107304.1-201ENST00000604229 296 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 AC121247.2-201ENST00000604776 136 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 AL645933.2-201ENST00000606743 1207 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 RNA5SP440-201ENST00000612665 119 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 AC006338.2-201ENST00000616864 791 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 AL035461.2-201ENST00000619201 524 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 AP003499.2-201ENST00000624100 483 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 AC098679.5-201ENST00000624394 571 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 AC090582.1-201ENST00000636321 199 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 OR7A1P-202ENST00000641542 1158 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 OR8G3P-202ENST00000641572 1255 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
USP39Q53GS9 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 156.6 ms