Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SLC6A14-202ENST00000598581 4520 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 AL158827.1-201ENST00000416300 391 ntBASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 AC092570.3-201ENST00000420113 693 ntBASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 RPL18P10-201ENST00000425606 538 ntBASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 RPS4XP16-201ENST00000427198 791 ntBASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 PPIAP21-201ENST00000464473 501 ntBASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 RPS4XP20-201ENST00000505751 772 ntBASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 AP002981.1-201ENST00000517692 975 ntBASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 AP006289.1-201ENST00000538089 277 ntBASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 MIR3667-201ENST00000581025 74 ntBASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 CR381572.2-201ENST00000624852 397 ntBASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 AC000095.2-202ENST00000637415 154 ntBASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 AC104581.5-201ENST00000624171 7141 ntBASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 AC139713.2-214ENST00000642059 1811 ntBASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 RPL17P36-201ENST00000420302 549 ntBASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 AC008033.2-201ENST00000542626 177 ntBASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 MIR3160-1-201ENST00000577972 85 ntBASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 MLECP1-201ENST00000615893 709 ntBASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 AC138907.8-201ENST00000623981 2256 ntBASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC88AQ3V6T2 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 U3.3-201ENST00000362986 216 ntBASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 AC073143.1-201ENST00000436316 395 ntBASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 RNA5SP43-201ENST00000516559 110 ntBASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 AC100784.1-201ENST00000522790 310 ntBASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 AC010857.1-201ENST00000606398 594 ntBASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 AC010168.2-201ENST00000562691 5428 ntBASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC88AQ3V6T2 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 AL590240.1-201ENST00000334118 313 ntBASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 SNORA70.2-201ENST00000364506 135 ntBASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 MIR134-201ENST00000385258 73 ntBASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 AC012519.1-201ENST00000424588 610 ntBASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 AP000797.2-201ENST00000475768 606 ntBASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 OR4A17P-201ENST00000526032 904 ntBASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 AL034374.2-201ENST00000605281 548 ntBASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 AC009234.1-201ENST00000634985 895 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms