Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
MSH6P52701 DMD-228ENST00000541735 7080 ntTSL 5 BASIC7.26□□□□□ -1.25
MSH6P52701 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
MSH6P52701 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC7.25□□□□□ -1.25
MSH6P52701 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC7.25□□□□□ -1.25
MSH6P52701 AC100871.1-201ENST00000507871 1456 ntBASIC7.25□□□□□ -1.25
MSH6P52701 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC7.25□□□□□ -1.25
MSH6P52701 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC7.25□□□□□ -1.25
MSH6P52701 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
MSH6P52701 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
MSH6P52701 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
MSH6P52701 RPL11P3-201ENST00000395256 523 ntBASIC7.25□□□□□ -1.25
MSH6P52701 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC7.25□□□□□ -1.25
MSH6P52701 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC7.25□□□□□ -1.25
MSH6P52701 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC7.25□□□□□ -1.25
MSH6P52701 RNA5SP43-201ENST00000516559 110 ntBASIC7.25□□□□□ -1.25
MSH6P52701 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC7.25□□□□□ -1.25
MSH6P52701 MIR4277-201ENST00000578298 84 ntBASIC7.25□□□□□ -1.25
MSH6P52701 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC7.25□□□□□ -1.25
MSH6P52701 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC7.25□□□□□ -1.25
MSH6P52701 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC7.25□□□□□ -1.25
MSH6P52701 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
MSH6P52701 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC7.24□□□□□ -1.25
MSH6P52701 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC7.24□□□□□ -1.25
MSH6P52701 Z97832.1-201ENST00000402490 328 ntBASIC7.24□□□□□ -1.25
MSH6P52701 AC004074.1-201ENST00000421810 1063 ntBASIC7.24□□□□□ -1.25
MSH6P52701 RPL34P27-201ENST00000428810 349 ntBASIC7.24□□□□□ -1.25
MSH6P52701 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC7.24□□□□□ -1.25
MSH6P52701 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC7.24□□□□□ -1.25
MSH6P52701 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC7.24□□□□□ -1.25
MSH6P52701 AC079168.1-201ENST00000458741 345 ntBASIC7.24□□□□□ -1.25
MSH6P52701 RN7SL244P-201ENST00000493405 297 ntBASIC7.24□□□□□ -1.25
MSH6P52701 RN7SKP67-201ENST00000515905 235 ntBASIC7.24□□□□□ -1.25
MSH6P52701 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC7.24□□□□□ -1.25
MSH6P52701 AC122688.1-201ENST00000541494 223 ntBASIC7.24□□□□□ -1.25
MSH6P52701 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
MSH6P52701 MIR3160-1-201ENST00000577972 85 ntBASIC7.24□□□□□ -1.25
MSH6P52701 RN7SL690P-201ENST00000582087 240 ntBASIC7.24□□□□□ -1.25
MSH6P52701 UGP2-232ENST00000640075 567 ntTSL 5 BASIC7.24□□□□□ -1.25
MSH6P52701 OR52H1-202ENST00000641796 1061 ntBASIC7.24□□□□□ -1.25
MSH6P52701 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
MSH6P52701 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC7.24□□□□□ -1.25
MSH6P52701 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC7.24□□□□□ -1.25
MSH6P52701 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC7.24□□□□□ -1.25
MSH6P52701 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
MSH6P52701 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
MSH6P52701 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC7.24□□□□□ -1.25
MSH6P52701 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC7.24□□□□□ -1.25
MSH6P52701 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC7.23□□□□□ -1.25
MSH6P52701 AL158152.1-201ENST00000602652 1435 ntBASIC7.23□□□□□ -1.25
MSH6P52701 MFSD8-220ENST00000641243 1422 ntBASIC7.23□□□□□ -1.25
MSH6P52701 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC7.23□□□□□ -1.25
MSH6P52701 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
MSH6P52701 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
MSH6P52701 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
MSH6P52701 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
MSH6P52701 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
MSH6P52701 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
MSH6P52701 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
MSH6P52701 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC7.23□□□□□ -1.25
MSH6P52701 SNORA66-201ENST00000384792 133 ntBASIC7.23□□□□□ -1.25
MSH6P52701 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC7.23□□□□□ -1.25
MSH6P52701 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC7.23□□□□□ -1.25
MSH6P52701 KCTD10P1-201ENST00000434203 625 ntBASIC7.23□□□□□ -1.25
MSH6P52701 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC7.23□□□□□ -1.25
MSH6P52701 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC7.23□□□□□ -1.25
MSH6P52701 RN7SL41P-201ENST00000476144 297 ntBASIC7.23□□□□□ -1.25
MSH6P52701 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC7.23□□□□□ -1.25
MSH6P52701 AC100784.1-201ENST00000522790 310 ntBASIC7.23□□□□□ -1.25
MSH6P52701 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC7.23□□□□□ -1.25
MSH6P52701 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC7.23□□□□□ -1.25
MSH6P52701 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC7.23□□□□□ -1.25
MSH6P52701 AL138960.1-201ENST00000613838 513 ntBASIC7.23□□□□□ -1.25
MSH6P52701 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC7.23□□□□□ -1.25
MSH6P52701 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC7.23□□□□□ -1.25
MSH6P52701 MIR6830-201ENST00000636015 70 ntBASIC7.23□□□□□ -1.25
MSH6P52701 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
MSH6P52701 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
MSH6P52701 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC7.23□□□□□ -1.25
MSH6P52701 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC7.23□□□□□ -1.25
MSH6P52701 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
MSH6P52701 SELE-205ENST00000367777 3576 ntTSL 5 BASIC7.23□□□□□ -1.25
MSH6P52701 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
MSH6P52701 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.25
MSH6P52701 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.25
MSH6P52701 AL591135.1-201ENST00000401578 5914 ntBASIC7.23□□□□□ -1.25
MSH6P52701 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
MSH6P52701 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
MSH6P52701 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
MSH6P52701 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.25
MSH6P52701 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
MSH6P52701 RNA5SP191-201ENST00000362585 102 ntBASIC7.22□□□□□ -1.25
MSH6P52701 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
MSH6P52701 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC7.22□□□□□ -1.25
MSH6P52701 RPS29P10-201ENST00000439197 166 ntBASIC7.22□□□□□ -1.25
MSH6P52701 AL137845.2-201ENST00000444292 988 ntBASIC7.22□□□□□ -1.25
MSH6P52701 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC7.22□□□□□ -1.25
MSH6P52701 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC7.22□□□□□ -1.25
MSH6P52701 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC7.22□□□□□ -1.25
MSH6P52701 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC7.22□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms