Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC5.07□□□□□ -1.6
SOX3P41225 CYCSP12-201ENST00000437729 300 ntBASIC5.07□□□□□ -1.6
SOX3P41225 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SOX3P41225 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC5.07□□□□□ -1.6
SOX3P41225 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.07□□□□□ -1.6
SOX3P41225 AC110749.1-201ENST00000462007 357 ntBASIC5.07□□□□□ -1.6
SOX3P41225 RN7SL177P-201ENST00000476596 299 ntBASIC5.07□□□□□ -1.6
SOX3P41225 AC025181.1-201ENST00000477507 416 ntBASIC5.07□□□□□ -1.6
SOX3P41225 UBA52P7-201ENST00000486088 380 ntBASIC5.07□□□□□ -1.6
SOX3P41225 RN7SL629P-201ENST00000489622 285 ntBASIC5.07□□□□□ -1.6
SOX3P41225 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC5.07□□□□□ -1.6
SOX3P41225 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.07□□□□□ -1.6
SOX3P41225 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC5.07□□□□□ -1.6
SOX3P41225 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC5.07□□□□□ -1.6
SOX3P41225 OR5AM1P-201ENST00000532136 1032 ntBASIC5.07□□□□□ -1.6
SOX3P41225 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC5.07□□□□□ -1.6
SOX3P41225 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC5.07□□□□□ -1.6
SOX3P41225 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.07□□□□□ -1.6
SOX3P41225 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC5.07□□□□□ -1.6
SOX3P41225 AP005403.1-201ENST00000579720 229 ntBASIC5.07□□□□□ -1.6
SOX3P41225 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.07□□□□□ -1.6
SOX3P41225 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC5.07□□□□□ -1.6
SOX3P41225 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.07□□□□□ -1.6
SOX3P41225 FAM60CP-201ENST00000591086 664 ntBASIC5.07□□□□□ -1.6
SOX3P41225 FKBP1AP1-201ENST00000594588 318 ntBASIC5.07□□□□□ -1.6
SOX3P41225 LSM1P2-201ENST00000604911 322 ntBASIC5.07□□□□□ -1.6
SOX3P41225 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC5.07□□□□□ -1.6
SOX3P41225 AC008833.1-201ENST00000611633 691 ntBASIC5.07□□□□□ -1.6
SOX3P41225 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SOX3P41225 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.07□□□□□ -1.6
SOX3P41225 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SOX3P41225 AC083899.1-201ENST00000454465 3819 ntBASIC5.07□□□□□ -1.6
SOX3P41225 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SOX3P41225 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
SOX3P41225 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SOX3P41225 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.07□□□□□ -1.6
SOX3P41225 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.06□□□□□ -1.6
SOX3P41225 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SOX3P41225 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SOX3P41225 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SOX3P41225 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SOX3P41225 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SOX3P41225 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
SOX3P41225 AC079097.1-201ENST00000512187 1399 ntBASIC5.06□□□□□ -1.6
SOX3P41225 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
SOX3P41225 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SOX3P41225 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.06□□□□□ -1.6
SOX3P41225 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SOX3P41225 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
SOX3P41225 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SOX3P41225 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
SOX3P41225 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SOX3P41225 SNORA16A-201ENST00000384342 137 ntBASIC5.06□□□□□ -1.6
SOX3P41225 AC019070.1-201ENST00000415008 1024 ntBASIC5.06□□□□□ -1.6
SOX3P41225 REREP1Y-201ENST00000422655 198 ntBASIC5.06□□□□□ -1.6
SOX3P41225 AJ239321.1-201ENST00000424255 564 ntBASIC5.06□□□□□ -1.6
SOX3P41225 CYCSP6-201ENST00000434498 302 ntBASIC5.06□□□□□ -1.6
SOX3P41225 REREP2Y-201ENST00000439103 200 ntBASIC5.06□□□□□ -1.6
SOX3P41225 RPL7P45-201ENST00000455851 743 ntBASIC5.06□□□□□ -1.6
SOX3P41225 AC011225.1-201ENST00000457751 369 ntBASIC5.06□□□□□ -1.6
SOX3P41225 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.06□□□□□ -1.6
SOX3P41225 RN7SL214P-201ENST00000487317 265 ntBASIC5.06□□□□□ -1.6
SOX3P41225 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.06□□□□□ -1.6
SOX3P41225 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC5.06□□□□□ -1.6
SOX3P41225 NPM1P52-201ENST00000518264 846 ntBASIC5.06□□□□□ -1.6
SOX3P41225 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC5.06□□□□□ -1.6
SOX3P41225 BMPR1APS2-201ENST00000527904 1012 ntBASIC5.06□□□□□ -1.6
SOX3P41225 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.06□□□□□ -1.6
SOX3P41225 AC122688.1-201ENST00000541494 223 ntBASIC5.06□□□□□ -1.6
SOX3P41225 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC5.06□□□□□ -1.6
SOX3P41225 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.06□□□□□ -1.6
SOX3P41225 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SOX3P41225 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC5.06□□□□□ -1.6
SOX3P41225 IMMP1LP3-201ENST00000604197 224 ntBASIC5.06□□□□□ -1.6
SOX3P41225 AP005131.7-201ENST00000610087 611 ntBASIC5.06□□□□□ -1.6
SOX3P41225 AL590410.1-201ENST00000617925 333 ntBASIC5.06□□□□□ -1.6
SOX3P41225 AC138965.3-201ENST00000623875 498 ntBASIC5.06□□□□□ -1.6
SOX3P41225 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
SOX3P41225 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
SOX3P41225 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.06□□□□□ -1.6
SOX3P41225 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
SOX3P41225 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SOX3P41225 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC5.06□□□□□ -1.6
SOX3P41225 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC5.06□□□□□ -1.6
SOX3P41225 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SOX3P41225 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.06□□□□□ -1.6
SOX3P41225 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
SOX3P41225 OR51C1P-202ENST00000641159 1444 ntBASIC5.06□□□□□ -1.6
SOX3P41225 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.06□□□□□ -1.6
SOX3P41225 AC003985.2-201ENST00000562268 1669 ntBASIC5.05□□□□□ -1.6
SOX3P41225 ADAM5-202ENST00000399789 1942 ntBASIC5.05□□□□□ -1.6
SOX3P41225 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.05□□□□□ -1.6
SOX3P41225 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
SOX3P41225 FGG-205ENST00000407946 1636 ntTSL 5 BASIC5.05□□□□□ -1.6
SOX3P41225 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
SOX3P41225 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SOX3P41225 AL132656.3-201ENST00000606384 1595 ntBASIC5.05□□□□□ -1.6
SOX3P41225 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
SOX3P41225 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.05□□□□□ -1.6
SOX3P41225 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms