Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
BDNFP23560 DUTP1-201ENST00000493631 470 ntBASIC6.04□□□□□ -1.44
BDNFP23560 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
BDNFP23560 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC6.04□□□□□ -1.44
BDNFP23560 RN7SKP67-201ENST00000515905 235 ntBASIC6.04□□□□□ -1.44
BDNFP23560 RNU6-1004P-201ENST00000516584 111 ntBASIC6.04□□□□□ -1.44
BDNFP23560 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC6.04□□□□□ -1.44
BDNFP23560 AC026616.1-201ENST00000523157 525 ntBASIC6.04□□□□□ -1.44
BDNFP23560 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC6.04□□□□□ -1.44
BDNFP23560 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC6.04□□□□□ -1.44
BDNFP23560 AL049872.1-201ENST00000556323 322 ntBASIC6.04□□□□□ -1.44
BDNFP23560 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC6.04□□□□□ -1.44
BDNFP23560 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC6.04□□□□□ -1.44
BDNFP23560 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC6.04□□□□□ -1.44
BDNFP23560 AC006115.2-201ENST00000596823 202 ntBASIC6.04□□□□□ -1.44
BDNFP23560 AC104695.2-201ENST00000605056 775 ntBASIC6.04□□□□□ -1.44
BDNFP23560 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC6.04□□□□□ -1.44
BDNFP23560 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC6.04□□□□□ -1.44
BDNFP23560 uc_338.9-201ENST00000617424 182 ntBASIC6.04□□□□□ -1.44
BDNFP23560 AL691477.1-201ENST00000624398 162 ntBASIC6.04□□□□□ -1.44
BDNFP23560 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC6.04□□□□□ -1.44
BDNFP23560 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
BDNFP23560 AC114786.1-201ENST00000512892 1415 ntBASIC6.04□□□□□ -1.44
BDNFP23560 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC6.04□□□□□ -1.44
BDNFP23560 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC6.04□□□□□ -1.44
BDNFP23560 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
BDNFP23560 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
BDNFP23560 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
BDNFP23560 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
BDNFP23560 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
BDNFP23560 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
BDNFP23560 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
BDNFP23560 HSPA8P14-201ENST00000552265 1805 ntBASIC6.04□□□□□ -1.44
BDNFP23560 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
BDNFP23560 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
BDNFP23560 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
BDNFP23560 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
BDNFP23560 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
BDNFP23560 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
BDNFP23560 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
BDNFP23560 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
BDNFP23560 DDX18P3-201ENST00000404856 2007 ntBASIC6.03□□□□□ -1.44
BDNFP23560 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
BDNFP23560 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
BDNFP23560 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
BDNFP23560 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
BDNFP23560 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
BDNFP23560 SNORA51.1-201ENST00000363243 140 ntBASIC6.03□□□□□ -1.44
BDNFP23560 RNU1-59P-201ENST00000364829 162 ntBASIC6.03□□□□□ -1.44
BDNFP23560 MIR130A-201ENST00000385274 89 ntBASIC6.03□□□□□ -1.44
BDNFP23560 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC6.03□□□□□ -1.44
BDNFP23560 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC6.03□□□□□ -1.44
BDNFP23560 AL160175.1-201ENST00000428124 247 ntBASIC6.03□□□□□ -1.44
BDNFP23560 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC6.03□□□□□ -1.44
BDNFP23560 FMO7P-201ENST00000436045 768 ntBASIC6.03□□□□□ -1.44
BDNFP23560 RPL12P46-201ENST00000436610 195 ntBASIC6.03□□□□□ -1.44
BDNFP23560 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC6.03□□□□□ -1.44
BDNFP23560 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC6.03□□□□□ -1.44
BDNFP23560 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC6.03□□□□□ -1.44
BDNFP23560 RPS23P2-201ENST00000463671 415 ntBASIC6.03□□□□□ -1.44
BDNFP23560 RPL23AP12-201ENST00000467573 473 ntBASIC6.03□□□□□ -1.44
BDNFP23560 RPS3AP15-201ENST00000483874 781 ntBASIC6.03□□□□□ -1.44
BDNFP23560 AC116562.1-201ENST00000485355 781 ntBASIC6.03□□□□□ -1.44
BDNFP23560 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC6.03□□□□□ -1.44
BDNFP23560 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC6.03□□□□□ -1.44
BDNFP23560 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC6.03□□□□□ -1.44
BDNFP23560 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC6.03□□□□□ -1.44
BDNFP23560 RNA5SP362-201ENST00000516048 118 ntBASIC6.03□□□□□ -1.44
BDNFP23560 snoU109.5-201ENST00000516231 132 ntBASIC6.03□□□□□ -1.44
BDNFP23560 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC6.03□□□□□ -1.44
BDNFP23560 MAL2-207ENST00000522828 603 ntTSL 3 BASIC6.03□□□□□ -1.44
BDNFP23560 MINCR-206ENST00000524335 499 ntTSL 2 BASIC6.03□□□□□ -1.44
BDNFP23560 DCN-210ENST00000547568 823 ntTSL 3 BASIC6.03□□□□□ -1.44
BDNFP23560 HSPE1P2-201ENST00000554777 306 ntBASIC6.03□□□□□ -1.44
BDNFP23560 AC127381.1-201ENST00000555979 939 ntBASIC6.03□□□□□ -1.44
BDNFP23560 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC6.03□□□□□ -1.44
BDNFP23560 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC6.03□□□□□ -1.44
BDNFP23560 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC6.03□□□□□ -1.44
BDNFP23560 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
BDNFP23560 AL589674.2-201ENST00000604304 337 ntBASIC6.03□□□□□ -1.44
BDNFP23560 AC007423.1-201ENST00000605009 627 ntBASIC6.03□□□□□ -1.44
BDNFP23560 AC015849.2-201ENST00000605738 409 ntBASIC6.03□□□□□ -1.44
BDNFP23560 AC110792.4-201ENST00000609843 298 ntBASIC6.03□□□□□ -1.44
BDNFP23560 U1.25-201ENST00000614085 162 ntBASIC6.03□□□□□ -1.44
BDNFP23560 AC090607.5-201ENST00000615692 224 ntBASIC6.03□□□□□ -1.44
BDNFP23560 AC139769.3-201ENST00000618383 175 ntBASIC6.03□□□□□ -1.44
BDNFP23560 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC6.03□□□□□ -1.44
BDNFP23560 CU639417.4-201ENST00000623928 207 ntBASIC6.03□□□□□ -1.44
BDNFP23560 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
BDNFP23560 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
BDNFP23560 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
BDNFP23560 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
BDNFP23560 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
BDNFP23560 MTCO1P11-201ENST00000429111 1528 ntBASIC6.03□□□□□ -1.44
BDNFP23560 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
BDNFP23560 DCN-218ENST00000551354 2924 ntTSL 3 BASIC6.02□□□□□ -1.45
BDNFP23560 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC6.02□□□□□ -1.45
BDNFP23560 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
BDNFP23560 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
BDNFP23560 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC6.02□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms