Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 FAM96AP1-201ENST00000430879 482 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AC090018.1-201ENST00000434369 367 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 CUBNP2-201ENST00000443534 1139 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 CCNJP2-201ENST00000457810 1163 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 RPL7P48-201ENST00000461513 746 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AC026348.1-201ENST00000462549 1053 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 RPL35AP19-201ENST00000469425 329 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 RN7SL643P-201ENST00000471845 291 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AC106800.3-201ENST00000511389 308 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 OR5BM1P-201ENST00000512021 366 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 SEPT10P1-201ENST00000517342 1162 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 ODF1-202ENST00000518835 368 ntTSL 3 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 IGKV1D-22-201ENST00000518953 324 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AC010306.1-201ENST00000523223 1117 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 OLR1-209ENST00000543993 822 ntTSL 2 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 DCN-209ENST00000546745 1026 ntTSL 3 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AC044913.1-201ENST00000557200 430 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 NDUFAF4P1-201ENST00000559425 519 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AL358072.1-201ENST00000604156 575 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AL392112.1-201ENST00000605115 829 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AC009779.8-202ENST00000607990 932 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AL592148.2-201ENST00000612210 372 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AL158163.2-201ENST00000619110 700 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 MIR6811-201ENST00000620409 58 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AC067852.7-201ENST00000623270 535 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AP000676.3-201ENST00000623299 569 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 DRG1-207ENST00000629688 309 ntTSL 5 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 U6.107-201ENST00000637108 79 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AL359091.1-201ENST00000449048 1734 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 TMCC1P1-201ENST00000518897 1980 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AC123769.1-201ENST00000530992 3192 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 snoZ40.1-201ENST00000364540 72 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 BMS1P3-201ENST00000372011 932 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 HNRNPDP2-201ENST00000406475 478 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AC027644.1-201ENST00000419595 298 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AC006960.1-201ENST00000419980 153 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 RPL7P53-201ENST00000421245 739 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AC234781.2-201ENST00000426370 994 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 DEFA9P-201ENST00000433042 285 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 POU5F1P5-201ENST00000445059 658 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 IGHV4-55-201ENST00000520889 368 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 NPIPB14P-203ENST00000532298 987 ntBASIC6.32□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms