Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 SULT1C2P2-201ENST00000562517 294 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 NDUFA5P11-201ENST00000567995 343 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 AL592494.3-201ENST00000609485 464 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 AL365181.4-201ENST00000609800 547 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 AC015922.4-201ENST00000612568 690 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 MIR6778-201ENST00000617912 73 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 MIR1910-201ENST00000636955 80 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 MIR193BHG-214ENST00000641765 509 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 AC002525.1-201ENST00000624392 1622 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
VPS39Q96JC1 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
VPS39Q96JC1 CASC19-248ENST00000641674 1356 ntBASIC5.42□□□□□ -1.54
VPS39Q96JC1 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VPS39Q96JC1 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS39Q96JC1 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS39Q96JC1 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS39Q96JC1 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS39Q96JC1 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS39Q96JC1 RNU1-19P-201ENST00000363306 165 ntBASIC5.42□□□□□ -1.54
VPS39Q96JC1 RNU4-2-201ENST00000365668 141 ntBASIC5.42□□□□□ -1.54
VPS39Q96JC1 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS39Q96JC1 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VPS39Q96JC1 AL136131.1-201ENST00000406079 803 ntBASIC5.42□□□□□ -1.54
VPS39Q96JC1 EEF1B2P8-201ENST00000414101 671 ntBASIC5.42□□□□□ -1.54
VPS39Q96JC1 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 RPL34P3-201ENST00000421454 338 ntBASIC5.42□□□□□ -1.54
VPS39Q96JC1 AL133173.1-201ENST00000423458 397 ntBASIC5.42□□□□□ -1.54
VPS39Q96JC1 AC017019.1-201ENST00000426129 261 ntBASIC5.42□□□□□ -1.54
VPS39Q96JC1 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 RPL19P16-201ENST00000433839 588 ntBASIC5.42□□□□□ -1.54
VPS39Q96JC1 AP000936.3-201ENST00000438127 255 ntBASIC5.42□□□□□ -1.54
VPS39Q96JC1 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 AL450023.1-201ENST00000450868 751 ntBASIC5.42□□□□□ -1.54
VPS39Q96JC1 AC022431.1-201ENST00000450941 438 ntBASIC5.42□□□□□ -1.54
VPS39Q96JC1 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 LDHBP2-201ENST00000456969 1005 ntBASIC5.42□□□□□ -1.54
VPS39Q96JC1 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 CYCSP22-201ENST00000517555 339 ntBASIC5.42□□□□□ -1.54
VPS39Q96JC1 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 AC109635.6-201ENST00000525487 1113 ntBASIC5.42□□□□□ -1.54
VPS39Q96JC1 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VPS39Q96JC1 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 AC012616.1-201ENST00000600294 197 ntBASIC5.42□□□□□ -1.54
VPS39Q96JC1 AC244107.2-201ENST00000611773 76 ntBASIC5.42□□□□□ -1.54
VPS39Q96JC1 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VPS39Q96JC1 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VPS39Q96JC1 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS39Q96JC1 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS39Q96JC1 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VPS39Q96JC1 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.42□□□□□ -1.54
VPS39Q96JC1 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS39Q96JC1 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.41□□□□□ -1.54
VPS39Q96JC1 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
VPS39Q96JC1 YES1P1-201ENST00000418510 1628 ntBASIC5.41□□□□□ -1.54
VPS39Q96JC1 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS39Q96JC1 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.41□□□□□ -1.54
VPS39Q96JC1 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS39Q96JC1 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
VPS39Q96JC1 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS39Q96JC1 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
VPS39Q96JC1 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS39Q96JC1 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
VPS39Q96JC1 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS39Q96JC1 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC5.41□□□□□ -1.54
VPS39Q96JC1 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.41□□□□□ -1.54
VPS39Q96JC1 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
VPS39Q96JC1 DBIP1-201ENST00000401435 260 ntBASIC5.41□□□□□ -1.54
VPS39Q96JC1 SLC20A1P1-201ENST00000413906 956 ntBASIC5.41□□□□□ -1.54
VPS39Q96JC1 AL662874.1-201ENST00000426065 230 ntBASIC5.41□□□□□ -1.54
VPS39Q96JC1 HSPD1P12-201ENST00000429127 1069 ntBASIC5.41□□□□□ -1.54
VPS39Q96JC1 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS39Q96JC1 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.41□□□□□ -1.54
VPS39Q96JC1 AL138899.2-201ENST00000439139 499 ntBASIC5.41□□□□□ -1.54
VPS39Q96JC1 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS39Q96JC1 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC5.41□□□□□ -1.54
VPS39Q96JC1 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms