Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
USP41Q3LFD5 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
USP41Q3LFD5 ZNF733P-202ENST00000444809 1573 ntBASIC5.87□□□□□ -1.47
USP41Q3LFD5 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
USP41Q3LFD5 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.87□□□□□ -1.47
USP41Q3LFD5 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
USP41Q3LFD5 AC005261.2-201ENST00000593427 4258 ntBASIC5.87□□□□□ -1.47
USP41Q3LFD5 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.87□□□□□ -1.47
USP41Q3LFD5 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
USP41Q3LFD5 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
USP41Q3LFD5 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.86□□□□□ -1.47
USP41Q3LFD5 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.86□□□□□ -1.47
USP41Q3LFD5 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
USP41Q3LFD5 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
USP41Q3LFD5 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
USP41Q3LFD5 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
USP41Q3LFD5 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
USP41Q3LFD5 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
USP41Q3LFD5 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.86□□□□□ -1.47
USP41Q3LFD5 MIR133B-201ENST00000362210 119 ntBASIC5.86□□□□□ -1.47
USP41Q3LFD5 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.86□□□□□ -1.47
USP41Q3LFD5 RNU1-136P-201ENST00000384181 164 ntBASIC5.86□□□□□ -1.47
USP41Q3LFD5 SNORA67-201ENST00000384423 137 ntBASIC5.86□□□□□ -1.47
USP41Q3LFD5 OR1F12-201ENST00000402365 945 ntBASIC5.86□□□□□ -1.47
USP41Q3LFD5 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
USP41Q3LFD5 RN7SKP213-201ENST00000410746 298 ntBASIC5.86□□□□□ -1.47
USP41Q3LFD5 RN7SKP279-201ENST00000411383 298 ntBASIC5.86□□□□□ -1.47
USP41Q3LFD5 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.86□□□□□ -1.47
USP41Q3LFD5 AC108075.1-201ENST00000424692 529 ntBASIC5.86□□□□□ -1.47
USP41Q3LFD5 CR848007.2-201ENST00000424918 787 ntBASIC5.86□□□□□ -1.47
USP41Q3LFD5 AC005033.1-201ENST00000428904 813 ntBASIC5.86□□□□□ -1.47
USP41Q3LFD5 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC5.86□□□□□ -1.47
USP41Q3LFD5 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC5.86□□□□□ -1.47
USP41Q3LFD5 AC099670.2-201ENST00000435130 321 ntBASIC5.86□□□□□ -1.47
USP41Q3LFD5 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC5.86□□□□□ -1.47
USP41Q3LFD5 MORF4L1P4-201ENST00000450245 976 ntBASIC5.86□□□□□ -1.47
USP41Q3LFD5 AC104849.1-201ENST00000462623 405 ntBASIC5.86□□□□□ -1.47
USP41Q3LFD5 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.86□□□□□ -1.47
USP41Q3LFD5 AC004453.1-201ENST00000487895 408 ntBASIC5.86□□□□□ -1.47
USP41Q3LFD5 OR9N1P-201ENST00000491296 333 ntBASIC5.86□□□□□ -1.47
USP41Q3LFD5 AC231760.1-201ENST00000498002 260 ntBASIC5.86□□□□□ -1.47
USP41Q3LFD5 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.86□□□□□ -1.47
USP41Q3LFD5 SCARNA16.4-201ENST00000516956 187 ntBASIC5.86□□□□□ -1.47
USP41Q3LFD5 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.86□□□□□ -1.47
USP41Q3LFD5 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.86□□□□□ -1.47
USP41Q3LFD5 AC073111.2-201ENST00000605657 1075 ntBASIC5.86□□□□□ -1.47
USP41Q3LFD5 AC004948.1-201ENST00000609858 672 ntBASIC5.86□□□□□ -1.47
USP41Q3LFD5 AP002505.2-201ENST00000623585 696 ntBASIC5.86□□□□□ -1.47
USP41Q3LFD5 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.86□□□□□ -1.47
USP41Q3LFD5 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
USP41Q3LFD5 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
USP41Q3LFD5 AC010266.2-201ENST00000564741 3255 ntBASIC5.86□□□□□ -1.47
USP41Q3LFD5 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
USP41Q3LFD5 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
USP41Q3LFD5 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
USP41Q3LFD5 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
USP41Q3LFD5 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.85□□□□□ -1.47
USP41Q3LFD5 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.85□□□□□ -1.47
USP41Q3LFD5 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.85□□□□□ -1.47
USP41Q3LFD5 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
USP41Q3LFD5 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
USP41Q3LFD5 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
USP41Q3LFD5 AC073429.2-201ENST00000569694 1444 ntBASIC5.85□□□□□ -1.47
USP41Q3LFD5 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
USP41Q3LFD5 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
USP41Q3LFD5 RNU6-152P-201ENST00000384037 107 ntBASIC5.85□□□□□ -1.47
USP41Q3LFD5 SNORA5.1-201ENST00000384275 131 ntBASIC5.85□□□□□ -1.47
USP41Q3LFD5 MIR765-201ENST00000390226 114 ntBASIC5.85□□□□□ -1.47
USP41Q3LFD5 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
USP41Q3LFD5 AL133388.1-201ENST00000404509 287 ntBASIC5.85□□□□□ -1.47
USP41Q3LFD5 AL358178.1-201ENST00000407698 397 ntBASIC5.85□□□□□ -1.47
USP41Q3LFD5 AC096921.1-201ENST00000411661 375 ntBASIC5.85□□□□□ -1.47
USP41Q3LFD5 SRSF1P1-201ENST00000424058 520 ntBASIC5.85□□□□□ -1.47
USP41Q3LFD5 SETP10-201ENST00000424368 814 ntBASIC5.85□□□□□ -1.47
USP41Q3LFD5 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC5.85□□□□□ -1.47
USP41Q3LFD5 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC5.85□□□□□ -1.47
USP41Q3LFD5 NPM1P18-201ENST00000434232 732 ntBASIC5.85□□□□□ -1.47
USP41Q3LFD5 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.85□□□□□ -1.47
USP41Q3LFD5 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.85□□□□□ -1.47
USP41Q3LFD5 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC5.85□□□□□ -1.47
USP41Q3LFD5 RPSAP50-201ENST00000481955 852 ntBASIC5.85□□□□□ -1.47
USP41Q3LFD5 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC5.85□□□□□ -1.47
USP41Q3LFD5 HMGB1P44-201ENST00000508597 572 ntBASIC5.85□□□□□ -1.47
USP41Q3LFD5 MTND6P2-201ENST00000512226 524 ntBASIC5.85□□□□□ -1.47
USP41Q3LFD5 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC5.85□□□□□ -1.47
USP41Q3LFD5 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.85□□□□□ -1.47
USP41Q3LFD5 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC5.85□□□□□ -1.47
USP41Q3LFD5 AC137627.1-201ENST00000545761 289 ntBASIC5.85□□□□□ -1.47
USP41Q3LFD5 AC012414.2-201ENST00000559474 187 ntBASIC5.85□□□□□ -1.47
USP41Q3LFD5 RBM22P1-201ENST00000578589 1214 ntBASIC5.85□□□□□ -1.47
USP41Q3LFD5 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.85□□□□□ -1.47
USP41Q3LFD5 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC5.85□□□□□ -1.47
USP41Q3LFD5 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.85□□□□□ -1.47
USP41Q3LFD5 AL109620.1-201ENST00000618738 1197 ntBASIC5.85□□□□□ -1.47
USP41Q3LFD5 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
USP41Q3LFD5 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC5.85□□□□□ -1.47
USP41Q3LFD5 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.85□□□□□ -1.47
USP41Q3LFD5 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.85□□□□□ -1.47
USP41Q3LFD5 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
USP41Q3LFD5 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms