Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
RNF4P78317 Z99496.1-201ENST00000469424 1477 ntBASIC6.36□□□□□ -1.39
RNF4P78317 CA1-225ENST00000626824 2405 ntTSL 5 BASIC6.36□□□□□ -1.39
RNF4P78317 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
RNF4P78317 GTF2H2B-203ENST00000508065 1432 ntBASIC6.36□□□□□ -1.39
RNF4P78317 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
RNF4P78317 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
RNF4P78317 RNU6-1339P-201ENST00000363574 91 ntBASIC6.36□□□□□ -1.39
RNF4P78317 RNU6-694P-201ENST00000364071 147 ntBASIC6.36□□□□□ -1.39
RNF4P78317 RN7SKP130-201ENST00000364924 301 ntBASIC6.36□□□□□ -1.39
RNF4P78317 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
RNF4P78317 RNU6-77P-201ENST00000410554 91 ntBASIC6.36□□□□□ -1.39
RNF4P78317 RPSAP60-201ENST00000415403 880 ntBASIC6.36□□□□□ -1.39
RNF4P78317 AP006748.1-201ENST00000418874 346 ntTSL 3 BASIC6.36□□□□□ -1.39
RNF4P78317 PTP4A1P1-201ENST00000420539 515 ntBASIC6.36□□□□□ -1.39
RNF4P78317 EIF4A1P2-201ENST00000422633 1220 ntBASIC6.36□□□□□ -1.39
RNF4P78317 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC6.36□□□□□ -1.39
RNF4P78317 UBQLN1P1-207ENST00000441056 1169 ntBASIC6.36□□□□□ -1.39
RNF4P78317 AC002486.2-201ENST00000447806 590 ntBASIC6.36□□□□□ -1.39
RNF4P78317 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC6.36□□□□□ -1.39
RNF4P78317 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
RNF4P78317 AC021074.2-201ENST00000468434 172 ntBASIC6.36□□□□□ -1.39
RNF4P78317 MTCO3P38-201ENST00000468910 766 ntBASIC6.36□□□□□ -1.39
RNF4P78317 RN7SL654P-201ENST00000479178 292 ntBASIC6.36□□□□□ -1.39
RNF4P78317 RN7SL655P-201ENST00000486087 298 ntBASIC6.36□□□□□ -1.39
RNF4P78317 RN7SL143P-201ENST00000496780 297 ntBASIC6.36□□□□□ -1.39
RNF4P78317 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC6.36□□□□□ -1.39
RNF4P78317 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC6.36□□□□□ -1.39
RNF4P78317 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC6.36□□□□□ -1.39
RNF4P78317 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC6.36□□□□□ -1.39
RNF4P78317 B3GNTL1P1-201ENST00000509174 289 ntBASIC6.36□□□□□ -1.39
RNF4P78317 AC093281.2-201ENST00000510153 597 ntBASIC6.36□□□□□ -1.39
RNF4P78317 AC109464.2-201ENST00000510242 943 ntBASIC6.36□□□□□ -1.39
RNF4P78317 OR10J9P-201ENST00000511932 987 ntBASIC6.36□□□□□ -1.39
RNF4P78317 RPL7L1P4-201ENST00000513004 707 ntBASIC6.36□□□□□ -1.39
RNF4P78317 CYP4F27P-201ENST00000514557 494 ntBASIC6.36□□□□□ -1.39
RNF4P78317 RNU6-416P-201ENST00000516265 103 ntBASIC6.36□□□□□ -1.39
RNF4P78317 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC6.36□□□□□ -1.39
RNF4P78317 IGKV2D-38-201ENST00000518423 240 ntBASIC6.36□□□□□ -1.39
RNF4P78317 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC6.36□□□□□ -1.39
RNF4P78317 CA1-215ENST00000522389 551 ntTSL 3 BASIC6.36□□□□□ -1.39
RNF4P78317 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC6.36□□□□□ -1.39
RNF4P78317 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC6.36□□□□□ -1.39
RNF4P78317 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC6.36□□□□□ -1.39
RNF4P78317 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC6.36□□□□□ -1.39
RNF4P78317 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC6.36□□□□□ -1.39
RNF4P78317 AC092325.1-201ENST00000566449 554 ntBASIC6.36□□□□□ -1.39
RNF4P78317 ZRANB2-AS2-215ENST00000596952 624 ntTSL 5 BASIC6.36□□□□□ -1.39
RNF4P78317 EIF1P6-201ENST00000600054 334 ntBASIC6.36□□□□□ -1.39
RNF4P78317 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC6.36□□□□□ -1.39
RNF4P78317 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC6.36□□□□□ -1.39
RNF4P78317 AC112220.3-201ENST00000605502 502 ntBASIC6.36□□□□□ -1.39
RNF4P78317 AF250324.2-201ENST00000608299 610 ntBASIC6.36□□□□□ -1.39
RNF4P78317 AC012360.2-201ENST00000609349 391 ntBASIC6.36□□□□□ -1.39
RNF4P78317 AL137000.1-201ENST00000610528 1244 ntBASIC6.36□□□□□ -1.39
RNF4P78317 CT45A7-201ENST00000610598 996 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
RNF4P78317 AL359314.1-201ENST00000616913 261 ntBASIC6.36□□□□□ -1.39
RNF4P78317 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC6.36□□□□□ -1.39
RNF4P78317 OR11G2-203ENST00000641879 4415 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
RNF4P78317 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC6.36□□□□□ -1.39
RNF4P78317 ZSCAN5A-201ENST00000391713 3562 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
RNF4P78317 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC6.36□□□□□ -1.39
RNF4P78317 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
RNF4P78317 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
RNF4P78317 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6.36□□□□□ -1.39
RNF4P78317 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC6.36□□□□□ -1.39
RNF4P78317 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC6.36□□□□□ -1.39
RNF4P78317 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC6.36□□□□□ -1.39
RNF4P78317 ZNF131-201ENST00000306938 2400 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
RNF4P78317 TCP11X2-202ENST00000453326 1747 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
RNF4P78317 TCP11X1-201ENST00000597070 1747 ntTSL 2 BASIC6.36□□□□□ -1.39
RNF4P78317 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
RNF4P78317 DEUP1-209ENST00000531792 1656 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
RNF4P78317 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
RNF4P78317 CA10-204ENST00000570565 2276 ntTSL 5 BASIC6.36□□□□□ -1.39
RNF4P78317 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
RNF4P78317 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
RNF4P78317 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
RNF4P78317 ANTXR2-204ENST00000404191 1469 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
RNF4P78317 AC100871.1-201ENST00000507871 1456 ntBASIC6.35□□□□□ -1.39
RNF4P78317 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
RNF4P78317 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC6.35□□□□□ -1.39
RNF4P78317 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC6.35□□□□□ -1.39
RNF4P78317 AC006600.2-201ENST00000624834 2506 ntBASIC6.35□□□□□ -1.39
RNF4P78317 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
RNF4P78317 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
RNF4P78317 NRCAM-201ENST00000351718 6228 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
RNF4P78317 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC6.35□□□□□ -1.39
RNF4P78317 HMGB1P5-201ENST00000255320 642 ntBASIC6.35□□□□□ -1.39
RNF4P78317 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
RNF4P78317 OR10J6P-201ENST00000289731 930 ntBASIC6.35□□□□□ -1.39
RNF4P78317 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
RNF4P78317 RNY4P24-201ENST00000362735 96 ntBASIC6.35□□□□□ -1.39
RNF4P78317 RN7SKP118-201ENST00000364331 330 ntBASIC6.35□□□□□ -1.39
RNF4P78317 RNU6-660P-201ENST00000364566 109 ntBASIC6.35□□□□□ -1.39
RNF4P78317 RNU6-185P-201ENST00000384421 107 ntBASIC6.35□□□□□ -1.39
RNF4P78317 LDHAP5-201ENST00000394996 622 ntBASIC6.35□□□□□ -1.39
RNF4P78317 HSPD1P16-201ENST00000402302 394 ntBASIC6.35□□□□□ -1.39
RNF4P78317 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC6.35□□□□□ -1.39
RNF4P78317 PIGPP2-201ENST00000411569 458 ntBASIC6.35□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms