Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC6.06□□□□□ -1.44
BDNFP23560 OR7E116P-201ENST00000448529 957 ntBASIC6.06□□□□□ -1.44
BDNFP23560 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC6.06□□□□□ -1.44
BDNFP23560 RN7SL570P-201ENST00000484405 292 ntBASIC6.06□□□□□ -1.44
BDNFP23560 AC010627.1-201ENST00000503819 1294 ntBASIC6.06□□□□□ -1.44
BDNFP23560 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC6.06□□□□□ -1.44
BDNFP23560 HIGD1AP18-201ENST00000520730 278 ntBASIC6.06□□□□□ -1.44
BDNFP23560 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC6.06□□□□□ -1.44
BDNFP23560 AC023158.1-201ENST00000561632 1025 ntBASIC6.06□□□□□ -1.44
BDNFP23560 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC6.06□□□□□ -1.44
BDNFP23560 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC6.06□□□□□ -1.44
BDNFP23560 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC6.06□□□□□ -1.44
BDNFP23560 VN1R84P-201ENST00000593697 235 ntBASIC6.06□□□□□ -1.44
BDNFP23560 PSMA6P4-201ENST00000603247 718 ntBASIC6.06□□□□□ -1.44
BDNFP23560 FO393422.1-201ENST00000603908 708 ntBASIC6.06□□□□□ -1.44
BDNFP23560 AL096803.3-201ENST00000609032 532 ntBASIC6.06□□□□□ -1.44
BDNFP23560 AC007342.8-201ENST00000623278 678 ntBASIC6.06□□□□□ -1.44
BDNFP23560 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
BDNFP23560 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC6.06□□□□□ -1.44
BDNFP23560 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
BDNFP23560 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC6.06□□□□□ -1.44
BDNFP23560 DDX6P1-205ENST00000441966 1436 ntBASIC6.06□□□□□ -1.44
BDNFP23560 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
BDNFP23560 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC6.06□□□□□ -1.44
BDNFP23560 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
BDNFP23560 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
BDNFP23560 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
BDNFP23560 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
BDNFP23560 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC6.05□□□□□ -1.44
BDNFP23560 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
BDNFP23560 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
BDNFP23560 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
BDNFP23560 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
BDNFP23560 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
BDNFP23560 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
BDNFP23560 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC6.05□□□□□ -1.44
BDNFP23560 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
BDNFP23560 RN7SKP293-201ENST00000411389 296 ntBASIC6.05□□□□□ -1.44
BDNFP23560 RNU6-603P-201ENST00000411403 107 ntBASIC6.05□□□□□ -1.44
BDNFP23560 OR6E1P-201ENST00000414424 923 ntBASIC6.05□□□□□ -1.44
BDNFP23560 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC6.05□□□□□ -1.44
BDNFP23560 BMS1P17-202ENST00000416720 316 ntBASIC6.05□□□□□ -1.44
BDNFP23560 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC6.05□□□□□ -1.44
BDNFP23560 AL158073.1-201ENST00000426848 1104 ntBASIC6.05□□□□□ -1.44
BDNFP23560 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC6.05□□□□□ -1.44
BDNFP23560 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC6.05□□□□□ -1.44
BDNFP23560 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC6.05□□□□□ -1.44
BDNFP23560 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC6.05□□□□□ -1.44
BDNFP23560 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC6.05□□□□□ -1.44
BDNFP23560 AC073909.1-201ENST00000447112 999 ntBASIC6.05□□□□□ -1.44
BDNFP23560 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC6.05□□□□□ -1.44
BDNFP23560 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC6.05□□□□□ -1.44
BDNFP23560 HMGB1P26-201ENST00000452520 628 ntBASIC6.05□□□□□ -1.44
BDNFP23560 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC6.05□□□□□ -1.44
BDNFP23560 AC092691.2-201ENST00000461787 803 ntBASIC6.05□□□□□ -1.44
BDNFP23560 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC6.05□□□□□ -1.44
BDNFP23560 OARD1-211ENST00000480585 829 ntTSL 3 BASIC6.05□□□□□ -1.44
BDNFP23560 AC074255.1-201ENST00000511259 501 ntBASIC6.05□□□□□ -1.44
BDNFP23560 FTH1P11-201ENST00000517577 551 ntBASIC6.05□□□□□ -1.44
BDNFP23560 AC107918.3-201ENST00000533272 382 ntBASIC6.05□□□□□ -1.44
BDNFP23560 AL121594.2-201ENST00000541658 472 ntBASIC6.05□□□□□ -1.44
BDNFP23560 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC6.05□□□□□ -1.44
BDNFP23560 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC6.05□□□□□ -1.44
BDNFP23560 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC6.05□□□□□ -1.44
BDNFP23560 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC6.05□□□□□ -1.44
BDNFP23560 MTCO3P22-201ENST00000603219 784 ntBASIC6.05□□□□□ -1.44
BDNFP23560 FAM72A-208ENST00000607379 1139 ntBASIC6.05□□□□□ -1.44
BDNFP23560 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC6.05□□□□□ -1.44
BDNFP23560 AC008115.3-201ENST00000614874 549 ntBASIC6.05□□□□□ -1.44
BDNFP23560 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC6.05□□□□□ -1.44
BDNFP23560 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC6.05□□□□□ -1.44
BDNFP23560 AL049767.1-202ENST00000637826 242 ntBASIC6.05□□□□□ -1.44
BDNFP23560 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC6.05□□□□□ -1.44
BDNFP23560 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
BDNFP23560 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
BDNFP23560 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
BDNFP23560 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
BDNFP23560 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
BDNFP23560 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
BDNFP23560 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC6.04□□□□□ -1.44
BDNFP23560 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
BDNFP23560 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
BDNFP23560 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.04□□□□□ -1.44
BDNFP23560 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC6.04□□□□□ -1.44
BDNFP23560 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
BDNFP23560 YES1P1-201ENST00000418510 1628 ntBASIC6.04□□□□□ -1.44
BDNFP23560 ATP5A1P4-201ENST00000556888 1605 ntBASIC6.04□□□□□ -1.44
BDNFP23560 AC079298.1-201ENST00000625026 1619 ntBASIC6.04□□□□□ -1.44
BDNFP23560 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC6.04□□□□□ -1.44
BDNFP23560 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
BDNFP23560 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
BDNFP23560 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
BDNFP23560 GSTM3P2-201ENST00000412746 530 ntBASIC6.04□□□□□ -1.44
BDNFP23560 AL596448.1-201ENST00000415024 392 ntBASIC6.04□□□□□ -1.44
BDNFP23560 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC6.04□□□□□ -1.44
BDNFP23560 AC079355.1-201ENST00000421770 223 ntBASIC6.04□□□□□ -1.44
BDNFP23560 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC6.04□□□□□ -1.44
BDNFP23560 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
BDNFP23560 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
BDNFP23560 AC087672.1-201ENST00000479876 766 ntBASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms