Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A3P12111 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC5.14□□□□□ -1.59
COL6A3P12111 AC015799.1-201ENST00000622996 3122 ntBASIC5.14□□□□□ -1.59
COL6A3P12111 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC5.14□□□□□ -1.59
COL6A3P12111 AC097374.1-203ENST00000400783 485 ntBASIC5.14□□□□□ -1.59
COL6A3P12111 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC5.14□□□□□ -1.59
COL6A3P12111 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC5.14□□□□□ -1.59
COL6A3P12111 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
COL6A3P12111 AC021074.2-201ENST00000468434 172 ntBASIC5.14□□□□□ -1.59
COL6A3P12111 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.14□□□□□ -1.59
COL6A3P12111 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC5.14□□□□□ -1.59
COL6A3P12111 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A3P12111 AL138721.1-201ENST00000616756 179 ntBASIC5.14□□□□□ -1.59
COL6A3P12111 TTC7B-201ENST00000328459 19458 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A3P12111 WDFY2-201ENST00000298125 9321 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL6A3P12111 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
COL6A3P12111 PTPRT-206ENST00000373198 12746 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL6A3P12111 AL391262.1-201ENST00000556558 1992 ntBASIC5.13□□□□□ -1.59
COL6A3P12111 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL6A3P12111 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL6A3P12111 OR8V1P-201ENST00000395193 873 ntBASIC5.13□□□□□ -1.59
COL6A3P12111 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC5.13□□□□□ -1.59
COL6A3P12111 UBE2Q2P12-201ENST00000414573 204 ntBASIC5.13□□□□□ -1.59
COL6A3P12111 BX679664.2-201ENST00000439282 283 ntBASIC5.13□□□□□ -1.59
COL6A3P12111 AC079168.1-201ENST00000458741 345 ntBASIC5.13□□□□□ -1.59
COL6A3P12111 AC020779.1-201ENST00000478757 796 ntBASIC5.13□□□□□ -1.59
COL6A3P12111 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC5.13□□□□□ -1.59
COL6A3P12111 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC5.13□□□□□ -1.59
COL6A3P12111 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC5.13□□□□□ -1.59
COL6A3P12111 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC5.13□□□□□ -1.59
COL6A3P12111 AL442067.2-201ENST00000614033 363 ntBASIC5.13□□□□□ -1.59
COL6A3P12111 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
COL6A3P12111 PHLPP2-206ENST00000568954 8317 ntAPPRIS P2 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL6A3P12111 OFD1P5Y-201ENST00000447585 2590 ntBASIC5.13□□□□□ -1.59
COL6A3P12111 ZRANB1-201ENST00000359653 5695 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL6A3P12111 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
COL6A3P12111 OAS2-202ENST00000392583 4734 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL6A3P12111 DNAH10-201ENST00000409039 14473 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
COL6A3P12111 AC096664.2-201ENST00000411843 406 ntBASIC5.13□□□□□ -1.59
COL6A3P12111 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.13□□□□□ -1.59
COL6A3P12111 RPL21P126-201ENST00000470049 478 ntBASIC5.13□□□□□ -1.59
COL6A3P12111 AC105137.1-201ENST00000484355 562 ntBASIC5.13□□□□□ -1.59
COL6A3P12111 TRBV5-2-201ENST00000489095 273 ntBASIC5.13□□□□□ -1.59
COL6A3P12111 AC008958.1-201ENST00000511047 682 ntBASIC5.13□□□□□ -1.59
COL6A3P12111 OR5BC1P-201ENST00000529327 739 ntBASIC5.13□□□□□ -1.59
COL6A3P12111 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC5.13□□□□□ -1.59
COL6A3P12111 AC010547.7-201ENST00000570323 333 ntBASIC5.13□□□□□ -1.59
COL6A3P12111 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC5.13□□□□□ -1.59
COL6A3P12111 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
COL6A3P12111 AC006206.1-201ENST00000544842 3387 ntBASIC5.13□□□□□ -1.59
COL6A3P12111 NHSL2-207ENST00000633930 13660 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
COL6A3P12111 AL353626.3-201ENST00000413399 657 ntBASIC5.12□□□□□ -1.59
COL6A3P12111 MEMO1P4-201ENST00000453590 386 ntBASIC5.12□□□□□ -1.59
COL6A3P12111 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.12□□□□□ -1.59
COL6A3P12111 AC009237.13-201ENST00000603193 276 ntBASIC5.12□□□□□ -1.59
COL6A3P12111 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A3P12111 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC5.12□□□□□ -1.59
COL6A3P12111 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A3P12111 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A3P12111 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A3P12111 MGP-201ENST00000228938 694 ntTSL 3 BASIC5.12□□□□□ -1.59
COL6A3P12111 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A3P12111 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
COL6A3P12111 RNU1-74P-201ENST00000384108 171 ntBASIC5.12□□□□□ -1.59
COL6A3P12111 AC007562.1-201ENST00000421819 517 ntBASIC5.12□□□□□ -1.59
COL6A3P12111 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A3P12111 AC023274.2-201ENST00000445264 521 ntBASIC5.12□□□□□ -1.59
COL6A3P12111 AL157884.3-201ENST00000448273 1184 ntBASIC5.12□□□□□ -1.59
COL6A3P12111 SLC25A18P1-201ENST00000449385 454 ntBASIC5.12□□□□□ -1.59
COL6A3P12111 RPS17P2-201ENST00000461663 408 ntBASIC5.12□□□□□ -1.59
COL6A3P12111 AC068522.1-201ENST00000482895 345 ntBASIC5.12□□□□□ -1.59
COL6A3P12111 AC097173.1-201ENST00000505862 819 ntBASIC5.12□□□□□ -1.59
COL6A3P12111 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A3P12111 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC5.12□□□□□ -1.59
COL6A3P12111 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC5.12□□□□□ -1.59
COL6A3P12111 MIR4286-201ENST00000580651 93 ntBASIC5.12□□□□□ -1.59
COL6A3P12111 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A3P12111 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A3P12111 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A3P12111 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A3P12111 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A3P12111 BRD8-202ENST00000254900 4388 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A3P12111 VCL-202ENST00000372755 6489 ntAPPRIS ALT1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A3P12111 SPTAN1-222ENST00000630804 7812 ntTSL 5 BASIC5.12□□□□□ -1.59
COL6A3P12111 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A3P12111 AC024451.1-201ENST00000508013 779 ntBASIC5.12□□□□□ -1.59
COL6A3P12111 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC5.12□□□□□ -1.59
COL6A3P12111 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC5.12□□□□□ -1.59
COL6A3P12111 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC5.12□□□□□ -1.59
COL6A3P12111 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC5.12□□□□□ -1.59
COL6A3P12111 AL356121.2-201ENST00000624715 780 ntBASIC5.12□□□□□ -1.59
COL6A3P12111 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A3P12111 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A3P12111 AL121950.1-201ENST00000624993 2077 ntBASIC5.12□□□□□ -1.59
COL6A3P12111 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL6A3P12111 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC5.11□□□□□ -1.59
COL6A3P12111 ROBO2-201ENST00000332191 5437 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
COL6A3P12111 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.11□□□□□ -1.59
COL6A3P12111 TRPM8-204ENST00000433712 5291 ntTSL 5 BASIC5.11□□□□□ -1.59
COL6A3P12111 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 121.4 ms