Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LHX3Q9UBR4 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 MIR718-201ENST00000390190 70 ntBASIC19.78■□□□□ 0.76
LHX3Q9UBR4 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 NIFKP9-201ENST00000419265 221 ntBASIC19.78■□□□□ 0.76
LHX3Q9UBR4 AL353807.1-201ENST00000427475 662 ntBASIC19.78■□□□□ 0.76
LHX3Q9UBR4 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 RPS15-203ENST00000586096 570 ntTSL 2 BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 AL049637.2-201ENST00000641778 930 ntBASIC19.78■□□□□ 0.76
LHX3Q9UBR4 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LHX3Q9UBR4 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.77■□□□□ 0.76
LHX3Q9UBR4 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.77■□□□□ 0.76
LHX3Q9UBR4 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LHX3Q9UBR4 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
LHX3Q9UBR4 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
LHX3Q9UBR4 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.77■□□□□ 0.76
LHX3Q9UBR4 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.77■□□□□ 0.76
LHX3Q9UBR4 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LHX3Q9UBR4 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LHX3Q9UBR4 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LHX3Q9UBR4 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
LHX3Q9UBR4 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
LHX3Q9UBR4 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.77■□□□□ 0.76
LHX3Q9UBR4 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.77■□□□□ 0.76
LHX3Q9UBR4 AP002982.1-201ENST00000492365 877 ntBASIC19.77■□□□□ 0.76
LHX3Q9UBR4 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.77■□□□□ 0.76
LHX3Q9UBR4 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LHX3Q9UBR4 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.77■□□□□ 0.76
LHX3Q9UBR4 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.77■□□□□ 0.76
LHX3Q9UBR4 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.77■□□□□ 0.76
LHX3Q9UBR4 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
LHX3Q9UBR4 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
LHX3Q9UBR4 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.75
LHX3Q9UBR4 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
LHX3Q9UBR4 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.77■□□□□ 0.75
LHX3Q9UBR4 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.77■□□□□ 0.75
LHX3Q9UBR4 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 HLA-A-209ENST00000638375 975 ntBASIC19.76■□□□□ 0.75
LHX3Q9UBR4 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
LHX3Q9UBR4 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
LHX3Q9UBR4 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LHX3Q9UBR4 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.75■□□□□ 0.75
LHX3Q9UBR4 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.75■□□□□ 0.75
LHX3Q9UBR4 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LHX3Q9UBR4 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LHX3Q9UBR4 AL596275.1-201ENST00000423464 877 ntBASIC19.75■□□□□ 0.75
LHX3Q9UBR4 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.75■□□□□ 0.75
LHX3Q9UBR4 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.75■□□□□ 0.75
LHX3Q9UBR4 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.75■□□□□ 0.75
LHX3Q9UBR4 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.75■□□□□ 0.75
LHX3Q9UBR4 AC073195.1-201ENST00000607241 877 ntBASIC19.75■□□□□ 0.75
LHX3Q9UBR4 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LHX3Q9UBR4 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms