Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
DDX28Q9NUL7 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.87■□□□□ 0.45
DDX28Q9NUL7 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
DDX28Q9NUL7 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
DDX28Q9NUL7 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.87■□□□□ 0.45
DDX28Q9NUL7 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
DDX28Q9NUL7 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
DDX28Q9NUL7 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
DDX28Q9NUL7 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
DDX28Q9NUL7 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
DDX28Q9NUL7 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
DDX28Q9NUL7 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
DDX28Q9NUL7 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC17.87■□□□□ 0.45
DDX28Q9NUL7 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC17.87■□□□□ 0.45
DDX28Q9NUL7 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC17.87■□□□□ 0.45
DDX28Q9NUL7 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
DDX28Q9NUL7 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
DDX28Q9NUL7 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
DDX28Q9NUL7 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
DDX28Q9NUL7 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
DDX28Q9NUL7 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
DDX28Q9NUL7 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
DDX28Q9NUL7 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
DDX28Q9NUL7 AC092720.2-201ENST00000602388 1665 ntBASIC17.87■□□□□ 0.45
DDX28Q9NUL7 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 KRT18P11-201ENST00000435214 1283 ntBASIC17.86■□□□□ 0.45
DDX28Q9NUL7 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 CDV3P1-201ENST00000471403 739 ntBASIC17.86■□□□□ 0.45
DDX28Q9NUL7 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 DBI-210ENST00000542275 757 ntTSL 5 BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
DDX28Q9NUL7 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.85■□□□□ 0.45
DDX28Q9NUL7 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
DDX28Q9NUL7 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
DDX28Q9NUL7 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
DDX28Q9NUL7 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
DDX28Q9NUL7 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
DDX28Q9NUL7 STX7-201ENST00000367937 1090 ntTSL 5 BASIC17.85■□□□□ 0.45
DDX28Q9NUL7 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
DDX28Q9NUL7 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
DDX28Q9NUL7 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
DDX28Q9NUL7 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
DDX28Q9NUL7 DLX3-202ENST00000512495 834 ntTSL 2 BASIC17.85■□□□□ 0.45
DDX28Q9NUL7 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC17.85■□□□□ 0.45
DDX28Q9NUL7 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
DDX28Q9NUL7 AC010536.3-201ENST00000620306 533 ntBASIC17.85■□□□□ 0.45
DDX28Q9NUL7 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
DDX28Q9NUL7 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
DDX28Q9NUL7 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms