Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PTP4A1Q93096 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.59■□□□□ 0.41
PTP4A1Q93096 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
PTP4A1Q93096 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.58■□□□□ 0.41
PTP4A1Q93096 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PTP4A1Q93096 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
PTP4A1Q93096 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PTP4A1Q93096 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
PTP4A1Q93096 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PTP4A1Q93096 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTP4A1Q93096 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTP4A1Q93096 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC17.58■□□□□ 0.4
PTP4A1Q93096 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
PTP4A1Q93096 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTP4A1Q93096 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC17.58■□□□□ 0.4
PTP4A1Q93096 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PTP4A1Q93096 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC17.58■□□□□ 0.4
PTP4A1Q93096 AL589743.5-201ENST00000616611 1050 ntBASIC17.58■□□□□ 0.4
PTP4A1Q93096 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTP4A1Q93096 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTP4A1Q93096 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PTP4A1Q93096 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
PTP4A1Q93096 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTP4A1Q93096 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
PTP4A1Q93096 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTP4A1Q93096 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.57■□□□□ 0.4
PTP4A1Q93096 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTP4A1Q93096 KRT17P1-201ENST00000399211 1546 ntBASIC17.57■□□□□ 0.4
PTP4A1Q93096 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
PTP4A1Q93096 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTP4A1Q93096 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTP4A1Q93096 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTP4A1Q93096 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTP4A1Q93096 NXN-202ENST00000537628 1340 ntTSL 3 BASIC17.57■□□□□ 0.4
PTP4A1Q93096 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTP4A1Q93096 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTP4A1Q93096 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTP4A1Q93096 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTP4A1Q93096 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
PTP4A1Q93096 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC17.57■□□□□ 0.4
PTP4A1Q93096 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC17.57■□□□□ 0.4
PTP4A1Q93096 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC17.57■□□□□ 0.4
PTP4A1Q93096 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTP4A1Q93096 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
PTP4A1Q93096 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTP4A1Q93096 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTP4A1Q93096 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTP4A1Q93096 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.57■□□□□ 0.4
PTP4A1Q93096 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTP4A1Q93096 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC17.56■□□□□ 0.4
PTP4A1Q93096 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
PTP4A1Q93096 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.56■□□□□ 0.4
PTP4A1Q93096 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTP4A1Q93096 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTP4A1Q93096 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTP4A1Q93096 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTP4A1Q93096 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTP4A1Q93096 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PTP4A1Q93096 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTP4A1Q93096 CROCCP5-201ENST00000436658 830 ntBASIC17.56■□□□□ 0.4
PTP4A1Q93096 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PTP4A1Q93096 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC17.56■□□□□ 0.4
PTP4A1Q93096 AF201337.1-201ENST00000520239 748 ntBASIC17.56■□□□□ 0.4
PTP4A1Q93096 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC17.56■□□□□ 0.4
PTP4A1Q93096 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC17.56■□□□□ 0.4
PTP4A1Q93096 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC17.56■□□□□ 0.4
PTP4A1Q93096 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTP4A1Q93096 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.56■□□□□ 0.4
PTP4A1Q93096 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC17.56■□□□□ 0.4
PTP4A1Q93096 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTP4A1Q93096 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTP4A1Q93096 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
PTP4A1Q93096 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PTP4A1Q93096 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTP4A1Q93096 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTP4A1Q93096 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTP4A1Q93096 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTP4A1Q93096 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTP4A1Q93096 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
PTP4A1Q93096 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
PTP4A1Q93096 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTP4A1Q93096 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTP4A1Q93096 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
PTP4A1Q93096 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTP4A1Q93096 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC17.55■□□□□ 0.4
PTP4A1Q93096 AC006970.2-201ENST00000450065 779 ntBASIC17.55■□□□□ 0.4
PTP4A1Q93096 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC17.55■□□□□ 0.4
PTP4A1Q93096 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
PTP4A1Q93096 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTP4A1Q93096 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.55■□□□□ 0.4
PTP4A1Q93096 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTP4A1Q93096 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTP4A1Q93096 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTP4A1Q93096 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTP4A1Q93096 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTP4A1Q93096 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
PTP4A1Q93096 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTP4A1Q93096 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTP4A1Q93096 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTP4A1Q93096 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms