Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 NDUFV2-AS1-203ENST00000608008 779 ntBASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 STK25-234ENST00000535007 2459 ntTSL 2 BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 CYGB-204ENST00000589342 815 ntTSL 3 BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 AL671883.3-201ENST00000603274 991 ntBASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 BID-212ENST00000614949 1988 ntTSL 5 BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 FEM1AP1-201ENST00000431297 1995 ntBASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC13.23□□□□□ -0.29
VPS13DQ5THJ4 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 LINC01238-205ENST00000567549 1107 ntBASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 SNX5-210ENST00000481323 562 ntTSL 3 BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 AC131212.4-201ENST00000623606 975 ntBASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
VPS13DQ5THJ4 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
VPS13DQ5THJ4 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC13.21□□□□□ -0.29
VPS13DQ5THJ4 TSPY21P-201ENST00000433481 731 ntBASIC13.21□□□□□ -0.29
VPS13DQ5THJ4 TSPY23P-201ENST00000440136 739 ntBASIC13.21□□□□□ -0.29
VPS13DQ5THJ4 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC13.21□□□□□ -0.29
VPS13DQ5THJ4 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC13.21□□□□□ -0.29
VPS13DQ5THJ4 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC13.21□□□□□ -0.29
VPS13DQ5THJ4 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
VPS13DQ5THJ4 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
VPS13DQ5THJ4 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC13.21□□□□□ -0.29
VPS13DQ5THJ4 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
VPS13DQ5THJ4 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
VPS13DQ5THJ4 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC13.21□□□□□ -0.29
VPS13DQ5THJ4 VENTXP5-201ENST00000523979 775 ntBASIC13.21□□□□□ -0.29
VPS13DQ5THJ4 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
VPS13DQ5THJ4 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
VPS13DQ5THJ4 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
VPS13DQ5THJ4 IPPK-202ENST00000375522 882 ntTSL 3 BASIC13.21□□□□□ -0.3
VPS13DQ5THJ4 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
VPS13DQ5THJ4 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC13.21□□□□□ -0.3
VPS13DQ5THJ4 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
VPS13DQ5THJ4 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
VPS13DQ5THJ4 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
VPS13DQ5THJ4 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC13.21□□□□□ -0.3
VPS13DQ5THJ4 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC13.21□□□□□ -0.3
VPS13DQ5THJ4 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
VPS13DQ5THJ4 MIR4674-201ENST00000582457 87 ntBASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms