Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 GCSHP2-201ENST00000560971 527 ntBASIC20.88■□□□□ 0.93
CHD9Q3L8U1 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC20.88■□□□□ 0.93
CHD9Q3L8U1 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.88■□□□□ 0.93
CHD9Q3L8U1 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.88■□□□□ 0.93
CHD9Q3L8U1 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.88■□□□□ 0.93
CHD9Q3L8U1 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHD9Q3L8U1 AC233723.2-201ENST00000623798 2106 ntBASIC20.88■□□□□ 0.93
CHD9Q3L8U1 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CHD9Q3L8U1 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHD9Q3L8U1 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC20.88■□□□□ 0.93
CHD9Q3L8U1 SPDYE15P-201ENST00000424157 909 ntBASIC20.88■□□□□ 0.93
CHD9Q3L8U1 AC111152.3-201ENST00000569699 673 ntBASIC20.88■□□□□ 0.93
CHD9Q3L8U1 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
CHD9Q3L8U1 AC104692.2-201ENST00000603054 253 ntBASIC20.88■□□□□ 0.93
CHD9Q3L8U1 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.88■□□□□ 0.93
CHD9Q3L8U1 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHD9Q3L8U1 AP000523.1-201ENST00000398242 1049 ntBASIC20.87■□□□□ 0.93
CHD9Q3L8U1 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CHD9Q3L8U1 AL136038.3-201ENST00000561909 1096 ntBASIC20.87■□□□□ 0.93
CHD9Q3L8U1 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.87■□□□□ 0.93
CHD9Q3L8U1 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CHD9Q3L8U1 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.87■□□□□ 0.93
CHD9Q3L8U1 KRT8P41-201ENST00000533985 1514 ntBASIC20.87■□□□□ 0.93
CHD9Q3L8U1 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHD9Q3L8U1 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.87■□□□□ 0.93
CHD9Q3L8U1 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.87■□□□□ 0.93
CHD9Q3L8U1 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CHD9Q3L8U1 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CHD9Q3L8U1 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHD9Q3L8U1 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CHD9Q3L8U1 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHD9Q3L8U1 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CHD9Q3L8U1 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.87■□□□□ 0.93
CHD9Q3L8U1 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHD9Q3L8U1 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
CHD9Q3L8U1 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHD9Q3L8U1 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHD9Q3L8U1 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHD9Q3L8U1 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHD9Q3L8U1 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.86■□□□□ 0.93
CHD9Q3L8U1 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC20.86■□□□□ 0.93
CHD9Q3L8U1 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CHD9Q3L8U1 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
CHD9Q3L8U1 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.86■□□□□ 0.93
CHD9Q3L8U1 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC20.86■□□□□ 0.93
CHD9Q3L8U1 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC20.86■□□□□ 0.93
CHD9Q3L8U1 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.86■□□□□ 0.93
CHD9Q3L8U1 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHD9Q3L8U1 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHD9Q3L8U1 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHD9Q3L8U1 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.85■□□□□ 0.93
CHD9Q3L8U1 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.85■□□□□ 0.93
CHD9Q3L8U1 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC20.85■□□□□ 0.93
CHD9Q3L8U1 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.85■□□□□ 0.93
CHD9Q3L8U1 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
CHD9Q3L8U1 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
CHD9Q3L8U1 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHD9Q3L8U1 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHD9Q3L8U1 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CHD9Q3L8U1 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHD9Q3L8U1 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHD9Q3L8U1 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHD9Q3L8U1 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.85■□□□□ 0.93
CHD9Q3L8U1 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.85■□□□□ 0.93
CHD9Q3L8U1 PLK5-205ENST00000642079 1969 ntBASIC20.85■□□□□ 0.93
CHD9Q3L8U1 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
CHD9Q3L8U1 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHD9Q3L8U1 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHD9Q3L8U1 MIR3652-201ENST00000579335 131 ntBASIC20.84■□□□□ 0.93
CHD9Q3L8U1 AF106564.1-201ENST00000607058 2553 ntBASIC20.84■□□□□ 0.93
CHD9Q3L8U1 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHD9Q3L8U1 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
CHD9Q3L8U1 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CHD9Q3L8U1 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.84■□□□□ 0.93
CHD9Q3L8U1 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC20.84■□□□□ 0.93
CHD9Q3L8U1 AC140113.3-201ENST00000605663 199 ntBASIC20.84■□□□□ 0.93
CHD9Q3L8U1 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHD9Q3L8U1 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
CHD9Q3L8U1 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHD9Q3L8U1 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.84■□□□□ 0.93
CHD9Q3L8U1 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC20.84■□□□□ 0.93
CHD9Q3L8U1 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHD9Q3L8U1 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CHD9Q3L8U1 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20.83■□□□□ 0.93
CHD9Q3L8U1 CALM1-205ENST00000553542 877 ntTSL 5 BASIC20.83■□□□□ 0.93
CHD9Q3L8U1 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CHD9Q3L8U1 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
CHD9Q3L8U1 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.83■□□□□ 0.93
CHD9Q3L8U1 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
CHD9Q3L8U1 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.83■□□□□ 0.93
CHD9Q3L8U1 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CHD9Q3L8U1 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
CHD9Q3L8U1 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.83■□□□□ 0.93
CHD9Q3L8U1 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
CHD9Q3L8U1 NEK4P2-201ENST00000580004 1012 ntBASIC20.83■□□□□ 0.93
CHD9Q3L8U1 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
CHD9Q3L8U1 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CHD9Q3L8U1 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CHD9Q3L8U1 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CHD9Q3L8U1 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms