Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC17.2■□□□□ 0.34
CX3CR1P49238 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC17.2■□□□□ 0.34
CX3CR1P49238 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
CX3CR1P49238 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CX3CR1P49238 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.2■□□□□ 0.34
CX3CR1P49238 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CX3CR1P49238 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CX3CR1P49238 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CX3CR1P49238 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CX3CR1P49238 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CX3CR1P49238 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
CX3CR1P49238 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.19■□□□□ 0.34
CX3CR1P49238 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CX3CR1P49238 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CX3CR1P49238 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.19■□□□□ 0.34
CX3CR1P49238 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
CX3CR1P49238 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
CX3CR1P49238 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
CX3CR1P49238 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CX3CR1P49238 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CX3CR1P49238 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CX3CR1P49238 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CX3CR1P49238 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC17.19■□□□□ 0.34
CX3CR1P49238 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CX3CR1P49238 PPP1R14BP3-201ENST00000509033 445 ntBASIC17.19■□□□□ 0.34
CX3CR1P49238 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CX3CR1P49238 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC17.19■□□□□ 0.34
CX3CR1P49238 WT1-AS_3.1-201ENST00000613262 234 ntBASIC17.19■□□□□ 0.34
CX3CR1P49238 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.19■□□□□ 0.34
CX3CR1P49238 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CX3CR1P49238 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CX3CR1P49238 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC17.19■□□□□ 0.34
CX3CR1P49238 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.19■□□□□ 0.34
CX3CR1P49238 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CX3CR1P49238 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.19■□□□□ 0.34
CX3CR1P49238 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.19■□□□□ 0.34
CX3CR1P49238 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CX3CR1P49238 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CX3CR1P49238 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CX3CR1P49238 AC018553.1-201ENST00000616682 1458 ntBASIC17.18■□□□□ 0.34
CX3CR1P49238 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
CX3CR1P49238 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CX3CR1P49238 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.18■□□□□ 0.34
CX3CR1P49238 AC005332.7-201ENST00000614046 2005 ntBASIC17.18■□□□□ 0.34
CX3CR1P49238 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.18■□□□□ 0.34
CX3CR1P49238 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
CX3CR1P49238 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
CX3CR1P49238 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CX3CR1P49238 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CX3CR1P49238 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CX3CR1P49238 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CX3CR1P49238 CALM3-202ENST00000391918 702 ntTSL 2 BASIC17.18■□□□□ 0.34
CX3CR1P49238 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CX3CR1P49238 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC17.18■□□□□ 0.34
CX3CR1P49238 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.18■□□□□ 0.34
CX3CR1P49238 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC17.18■□□□□ 0.34
CX3CR1P49238 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC17.18■□□□□ 0.34
CX3CR1P49238 AC092118.2-201ENST00000613495 667 ntBASIC17.18■□□□□ 0.34
CX3CR1P49238 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.18■□□□□ 0.34
CX3CR1P49238 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CX3CR1P49238 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CX3CR1P49238 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CX3CR1P49238 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.18■□□□□ 0.34
CX3CR1P49238 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CX3CR1P49238 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.18■□□□□ 0.34
CX3CR1P49238 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CX3CR1P49238 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CX3CR1P49238 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.17■□□□□ 0.34
CX3CR1P49238 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
CX3CR1P49238 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
CX3CR1P49238 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CR1P49238 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CR1P49238 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC17.17■□□□□ 0.34
CX3CR1P49238 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC17.17■□□□□ 0.34
CX3CR1P49238 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.17■□□□□ 0.34
CX3CR1P49238 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CR1P49238 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
CX3CR1P49238 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CR1P49238 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CR1P49238 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CR1P49238 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CR1P49238 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CR1P49238 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CR1P49238 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CR1P49238 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC17.17■□□□□ 0.34
CX3CR1P49238 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CR1P49238 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CR1P49238 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC17.17■□□□□ 0.34
CX3CR1P49238 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
CX3CR1P49238 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC17.17■□□□□ 0.34
CX3CR1P49238 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC17.17■□□□□ 0.34
CX3CR1P49238 AC116351.2-201ENST00000606540 1585 ntBASIC17.17■□□□□ 0.34
CX3CR1P49238 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CR1P49238 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CX3CR1P49238 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
CX3CR1P49238 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CX3CR1P49238 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.17■□□□□ 0.34
CX3CR1P49238 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.17■□□□□ 0.34
CX3CR1P49238 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
CX3CR1P49238 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms