Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MMP3P08254 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MMP3P08254 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MMP3P08254 NME1-207ENST00000480143 964 ntTSL 2 BASIC21.75■■□□□ 1.07
MMP3P08254 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
MMP3P08254 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
MMP3P08254 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
MMP3P08254 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
MMP3P08254 FEM1AP1-201ENST00000431297 1995 ntBASIC21.75■■□□□ 1.07
MMP3P08254 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MMP3P08254 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MMP3P08254 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
MMP3P08254 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC21.75■■□□□ 1.07
MMP3P08254 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.75■■□□□ 1.07
MMP3P08254 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MMP3P08254 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
MMP3P08254 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
MMP3P08254 GOLGA2P11-201ENST00000562660 1621 ntBASIC21.74■■□□□ 1.07
MMP3P08254 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
MMP3P08254 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
MMP3P08254 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MMP3P08254 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC21.74■■□□□ 1.07
MMP3P08254 DERL1-203ENST00000419562 918 ntTSL 2 BASIC21.74■■□□□ 1.07
MMP3P08254 WWOX-216ENST00000569818 525 ntBASIC21.74■■□□□ 1.07
MMP3P08254 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC21.74■■□□□ 1.07
MMP3P08254 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
MMP3P08254 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
MMP3P08254 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC21.74■■□□□ 1.07
MMP3P08254 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MMP3P08254 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
MMP3P08254 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
MMP3P08254 AC073314.1-201ENST00000568729 2216 ntBASIC21.74■■□□□ 1.07
MMP3P08254 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MMP3P08254 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MMP3P08254 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
MMP3P08254 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MMP3P08254 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MMP3P08254 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MMP3P08254 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MMP3P08254 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC21.73■■□□□ 1.07
MMP3P08254 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
MMP3P08254 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC21.73■■□□□ 1.07
MMP3P08254 HMGA1P5-201ENST00000412453 271 ntBASIC21.73■■□□□ 1.07
MMP3P08254 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC21.73■■□□□ 1.07
MMP3P08254 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC21.73■■□□□ 1.07
MMP3P08254 AL160286.2-201ENST00000567150 934 ntBASIC21.73■■□□□ 1.07
MMP3P08254 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC21.73■■□□□ 1.07
MMP3P08254 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC21.73■■□□□ 1.07
MMP3P08254 AC116562.4-202ENST00000641738 218 ntBASIC21.73■■□□□ 1.07
MMP3P08254 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MMP3P08254 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.73■■□□□ 1.07
MMP3P08254 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
MMP3P08254 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MMP3P08254 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MMP3P08254 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC21.72■■□□□ 1.07
MMP3P08254 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MMP3P08254 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC21.72■■□□□ 1.07
MMP3P08254 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MMP3P08254 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
MMP3P08254 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
MMP3P08254 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MMP3P08254 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
MMP3P08254 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC21.72■■□□□ 1.07
MMP3P08254 CCR12P-201ENST00000446203 998 ntBASIC21.72■■□□□ 1.07
MMP3P08254 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC21.72■■□□□ 1.07
MMP3P08254 LTBR-211ENST00000543190 785 ntTSL 3 BASIC21.72■■□□□ 1.07
MMP3P08254 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
MMP3P08254 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
MMP3P08254 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.72■■□□□ 1.07
MMP3P08254 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
MMP3P08254 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MMP3P08254 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MMP3P08254 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MMP3P08254 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MMP3P08254 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
MMP3P08254 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MMP3P08254 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MMP3P08254 SLC25A1P2-201ENST00000430693 912 ntBASIC21.71■■□□□ 1.07
MMP3P08254 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC21.71■■□□□ 1.07
MMP3P08254 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC21.71■■□□□ 1.07
MMP3P08254 GLRB-205ENST00000512619 728 ntTSL 3 BASIC21.71■■□□□ 1.07
MMP3P08254 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC21.71■■□□□ 1.07
MMP3P08254 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
MMP3P08254 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC21.71■■□□□ 1.07
MMP3P08254 LINC01465-201ENST00000408887 1940 ntBASIC21.7■■□□□ 1.07
MMP3P08254 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.7■■□□□ 1.07
MMP3P08254 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MMP3P08254 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
MMP3P08254 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.7■■□□□ 1.06
MMP3P08254 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC21.7■■□□□ 1.06
MMP3P08254 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.7■■□□□ 1.06
MMP3P08254 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
MMP3P08254 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
MMP3P08254 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC21.7■■□□□ 1.06
MMP3P08254 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC21.7■■□□□ 1.06
MMP3P08254 BX664615.1-201ENST00000443558 458 ntBASIC21.7■■□□□ 1.06
MMP3P08254 AC087388.1-201ENST00000571370 1112 ntBASIC21.7■■□□□ 1.06
MMP3P08254 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MMP3P08254 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC21.7■■□□□ 1.06
MMP3P08254 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms