Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC23.13■■□□□ 1.29
HLA-DOAP06340 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
HLA-DOAP06340 RCC2P6-201ENST00000526625 1557 ntBASIC23.13■■□□□ 1.29
HLA-DOAP06340 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
HLA-DOAP06340 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC23.13■■□□□ 1.29
HLA-DOAP06340 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
HLA-DOAP06340 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
HLA-DOAP06340 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
HLA-DOAP06340 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
HLA-DOAP06340 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
HLA-DOAP06340 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
HLA-DOAP06340 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
HLA-DOAP06340 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC23.12■■□□□ 1.29
HLA-DOAP06340 CRAT-202ENST00000393384 973 ntTSL 2 BASIC23.12■■□□□ 1.29
HLA-DOAP06340 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC23.12■■□□□ 1.29
HLA-DOAP06340 PTPA-216ENST00000432651 857 ntTSL 2 BASIC23.12■■□□□ 1.29
HLA-DOAP06340 NME1-207ENST00000480143 964 ntTSL 2 BASIC23.12■■□□□ 1.29
HLA-DOAP06340 AC097488.1-201ENST00000507834 756 ntBASIC23.12■■□□□ 1.29
HLA-DOAP06340 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC23.12■■□□□ 1.29
HLA-DOAP06340 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC23.12■■□□□ 1.29
HLA-DOAP06340 C2orf69P3-201ENST00000565542 1120 ntBASIC23.12■■□□□ 1.29
HLA-DOAP06340 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
HLA-DOAP06340 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC23.12■■□□□ 1.29
HLA-DOAP06340 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC23.12■■□□□ 1.29
HLA-DOAP06340 AC011298.2-201ENST00000617989 482 ntBASIC23.12■■□□□ 1.29
HLA-DOAP06340 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC23.12■■□□□ 1.29
HLA-DOAP06340 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
HLA-DOAP06340 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC23.11■■□□□ 1.29
HLA-DOAP06340 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HLA-DOAP06340 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
HLA-DOAP06340 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
HLA-DOAP06340 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC23.11■■□□□ 1.29
HLA-DOAP06340 AC004951.3-201ENST00000418645 1148 ntBASIC23.11■■□□□ 1.29
HLA-DOAP06340 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC23.11■■□□□ 1.29
HLA-DOAP06340 RN7SL850P-201ENST00000579959 291 ntBASIC23.11■■□□□ 1.29
HLA-DOAP06340 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
HLA-DOAP06340 AC130371.2-201ENST00000619443 611 ntBASIC23.11■■□□□ 1.29
HLA-DOAP06340 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
HLA-DOAP06340 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC23.11■■□□□ 1.29
HLA-DOAP06340 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC23.11■■□□□ 1.29
HLA-DOAP06340 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC23.11■■□□□ 1.29
HLA-DOAP06340 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC23.11■■□□□ 1.29
HLA-DOAP06340 FEM1AP1-201ENST00000431297 1995 ntBASIC23.1■■□□□ 1.29
HLA-DOAP06340 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HLA-DOAP06340 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC23.1■■□□□ 1.29
HLA-DOAP06340 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
HLA-DOAP06340 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
HLA-DOAP06340 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC23.1■■□□□ 1.29
HLA-DOAP06340 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC23.1■■□□□ 1.29
HLA-DOAP06340 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
HLA-DOAP06340 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
HLA-DOAP06340 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HLA-DOAP06340 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC23.1■■□□□ 1.29
HLA-DOAP06340 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
HLA-DOAP06340 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HLA-DOAP06340 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
HLA-DOAP06340 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HLA-DOAP06340 CRYGFP-201ENST00000418459 633 ntBASIC23.1■■□□□ 1.29
HLA-DOAP06340 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC23.1■■□□□ 1.29
HLA-DOAP06340 DUT-205ENST00000558813 769 ntTSL 2 BASIC23.1■■□□□ 1.29
HLA-DOAP06340 GABARAPL3-202ENST00000624044 1851 ntBASIC23.1■■□□□ 1.29
HLA-DOAP06340 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HLA-DOAP06340 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC23.1■■□□□ 1.29
HLA-DOAP06340 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC23.1■■□□□ 1.29
HLA-DOAP06340 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
HLA-DOAP06340 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC23.09■■□□□ 1.29
HLA-DOAP06340 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HLA-DOAP06340 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
HLA-DOAP06340 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HLA-DOAP06340 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HLA-DOAP06340 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC23.09■■□□□ 1.29
HLA-DOAP06340 AC113347.1-201ENST00000413321 391 ntBASIC23.09■■□□□ 1.29
HLA-DOAP06340 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC23.09■■□□□ 1.29
HLA-DOAP06340 SLC25A1P4-201ENST00000567977 778 ntBASIC23.09■■□□□ 1.29
HLA-DOAP06340 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
HLA-DOAP06340 P4HB-223ENST00000576390 439 ntTSL 4 BASIC23.09■■□□□ 1.29
HLA-DOAP06340 AP000692.2-201ENST00000608391 879 ntBASIC23.09■■□□□ 1.29
HLA-DOAP06340 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC23.09■■□□□ 1.29
HLA-DOAP06340 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HLA-DOAP06340 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC23.09■■□□□ 1.29
HLA-DOAP06340 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
HLA-DOAP06340 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC23.09■■□□□ 1.29
HLA-DOAP06340 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC23.09■■□□□ 1.29
HLA-DOAP06340 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
HLA-DOAP06340 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
HLA-DOAP06340 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
HLA-DOAP06340 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
HLA-DOAP06340 TMA16-209ENST00000513272 803 ntTSL 2 BASIC23.08■■□□□ 1.29
HLA-DOAP06340 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
HLA-DOAP06340 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
HLA-DOAP06340 AC092865.7-201ENST00000641832 219 ntBASIC23.08■■□□□ 1.29
HLA-DOAP06340 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC23.08■■□□□ 1.29
HLA-DOAP06340 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC23.08■■□□□ 1.29
HLA-DOAP06340 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
HLA-DOAP06340 AL691432.2-201ENST00000607222 2038 ntBASIC23.08■■□□□ 1.28
HLA-DOAP06340 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC23.08■■□□□ 1.28
HLA-DOAP06340 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
HLA-DOAP06340 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
HLA-DOAP06340 AL162377.1-201ENST00000618844 1793 ntBASIC23.07■■□□□ 1.28
HLA-DOAP06340 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms