Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 PCDHB18P-201ENST00000524813 2368 ntBASIC14.31□□□□□ -0.12
SMKR1H3BMG3 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 KRT87P-202ENST00000534226 1464 ntBASIC14.31□□□□□ -0.12
SMKR1H3BMG3 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC14.31□□□□□ -0.12
SMKR1H3BMG3 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 SLC7A5P2-201ENST00000553010 536 ntBASIC14.3□□□□□ -0.12
SMKR1H3BMG3 FAM21FP-204ENST00000608637 956 ntBASIC14.3□□□□□ -0.12
SMKR1H3BMG3 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
SMKR1H3BMG3 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 MIR572-201ENST00000384983 95 ntBASIC14.29□□□□□ -0.12
SMKR1H3BMG3 AC007322.3-201ENST00000426526 701 ntBASIC14.29□□□□□ -0.12
SMKR1H3BMG3 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 AC079140.4-201ENST00000507448 529 ntBASIC14.29□□□□□ -0.12
SMKR1H3BMG3 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 AC138907.5-202ENST00000569484 235 ntBASIC14.29□□□□□ -0.12
SMKR1H3BMG3 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 AL136162.1-201ENST00000607711 1078 ntBASIC14.29□□□□□ -0.12
SMKR1H3BMG3 MPST-204ENST00000404393 1329 ntTSL 5 BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms