Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 SAMMSON-226ENST00000642089 1582 ntBASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 CARF-208ENST00000428585 2513 ntTSL 2 BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 CELF2-203ENST00000416382 6894 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 SNORA84-201ENST00000459229 133 ntBASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 RPL12P20-201ENST00000475538 479 ntBASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 OR5M2P-201ENST00000529003 936 ntBASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 AP000889.1-201ENST00000530968 660 ntBASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 NMNAT1P1-201ENST00000554095 876 ntBASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 LPP-208ENST00000448637 5835 ntTSL 5 BASIC6.63□□□□□ -1.35
SHANK3Q9BYB0 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC6.63□□□□□ -1.35
SHANK3Q9BYB0 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SHANK3Q9BYB0 TRPM8-201ENST00000324695 5621 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SHANK3Q9BYB0 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
SHANK3Q9BYB0 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SHANK3Q9BYB0 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
SHANK3Q9BYB0 ETV1-210ENST00000430479 6740 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SHANK3Q9BYB0 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
SHANK3Q9BYB0 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SHANK3Q9BYB0 MAX-203ENST00000341653 330 ntTSL 2 BASIC6.63□□□□□ -1.35
SHANK3Q9BYB0 CYCSP11-201ENST00000436426 315 ntBASIC6.63□□□□□ -1.35
SHANK3Q9BYB0 SCARNA22-201ENST00000503991 125 ntBASIC6.63□□□□□ -1.35
SHANK3Q9BYB0 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC6.63□□□□□ -1.35
SHANK3Q9BYB0 AC133555.2-201ENST00000550213 292 ntBASIC6.63□□□□□ -1.35
SHANK3Q9BYB0 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC6.63□□□□□ -1.35
SHANK3Q9BYB0 AC011944.2-201ENST00000624440 683 ntBASIC6.63□□□□□ -1.35
SHANK3Q9BYB0 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
SHANK3Q9BYB0 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC6.63□□□□□ -1.35
SHANK3Q9BYB0 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC6.63□□□□□ -1.35
SHANK3Q9BYB0 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
SHANK3Q9BYB0 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 ELOCP19-201ENST00000411919 318 ntBASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 AC073143.1-201ENST00000436316 395 ntBASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 MED28P3-201ENST00000444288 531 ntBASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 CYCSP29-201ENST00000533731 318 ntBASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 AP001880.2-201ENST00000538233 448 ntBASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 EIF1P5-201ENST00000585002 234 ntBASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 AC020910.3-201ENST00000603701 874 ntBASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 PLEKHM3-202ENST00000427836 9807 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 SIAH3-201ENST00000400405 7057 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 AP003175.1-201ENST00000641383 6658 ntBASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 OR8V1P-201ENST00000395193 873 ntBASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 RNU4-25P-201ENST00000410569 230 ntBASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 AL590399.2-201ENST00000427536 309 ntBASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 RPS29P9-201ENST00000440360 171 ntBASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 RPL7P40-201ENST00000481703 745 ntBASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 AC019322.1-201ENST00000571869 389 ntBASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 VN1R85P-201ENST00000601587 426 ntBASIC6.62□□□□□ -1.35
SHANK3Q9BYB0 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC6.61□□□□□ -1.35
SHANK3Q9BYB0 EEF1A1P36-201ENST00000427807 1351 ntBASIC6.61□□□□□ -1.35
SHANK3Q9BYB0 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
SHANK3Q9BYB0 LCOR-201ENST00000286067 4542 ntBASIC6.61□□□□□ -1.35
SHANK3Q9BYB0 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
SHANK3Q9BYB0 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
SHANK3Q9BYB0 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC6.61□□□□□ -1.35
SHANK3Q9BYB0 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC6.61□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms