Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AL358178.1-201ENST00000407698 397 ntBASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 RN7SKP222-201ENST00000410651 315 ntBASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 AL121776.1-201ENST00000429337 372 ntBASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 RPL36AP39-201ENST00000445859 318 ntBASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 YWHAEP1-201ENST00000453697 763 ntBASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 AC004129.2-201ENST00000457229 287 ntBASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 RPL32P33-201ENST00000487023 394 ntBASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 AL136038.1-201ENST00000497246 351 ntBASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 AC138866.2-201ENST00000508650 584 ntBASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 FABP5P6-201ENST00000510588 409 ntBASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 AC074087.1-201ENST00000512059 724 ntBASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 RFPL4AP5-201ENST00000514977 504 ntBASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 MRPS16P1-201ENST00000523462 412 ntBASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 FO393422.1-201ENST00000603908 708 ntBASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 RN7SL787P-201ENST00000613000 284 ntBASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 AC116447.1-201ENST00000613153 453 ntBASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 UBA3-213ENST00000631029 123 ntTSL 5 BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 AC004817.4-201ENST00000602396 3625 ntBASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC7.34□□□□□ -1.24
CHMP4AQ9BY43 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC7.34□□□□□ -1.24
CHMP4AQ9BY43 AL078621.3-201ENST00000623707 2042 ntBASIC7.34□□□□□ -1.24
CHMP4AQ9BY43 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 AFP-201ENST00000226359 1914 ntTSL 5 BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 AC239868.2-201ENST00000564237 4527 ntBASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 AC022164.1-201ENST00000568767 2673 ntBASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 RNA5SP131-201ENST00000365452 119 ntBASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 RN7SKP269-201ENST00000365545 319 ntBASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 PPCS-201ENST00000372556 984 ntTSL 2 BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 LSM5-205ENST00000409952 687 ntTSL 4 BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 LSM5-206ENST00000409987 504 ntTSL 5 BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 AC211486.3-201ENST00000412694 621 ntBASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 HSPE1P16-201ENST00000426640 348 ntBASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 AC023141.9-201ENST00000458734 412 ntBASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 RPS23P6-201ENST00000466136 431 ntBASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 AC106872.4-201ENST00000510050 523 ntBASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 AC002069.2-201ENST00000603580 883 ntBASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 AC009032.1-201ENST00000617574 431 ntBASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 AL355480.1-201ENST00000629041 99 ntBASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 AC104118.1-201ENST00000607625 1589 ntBASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
CHMP4AQ9BY43 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 AP000473.2-201ENST00000602659 1537 ntBASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 RNA5SP30-201ENST00000365552 115 ntBASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 RNU4-31P-201ENST00000384211 141 ntBASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 AL391422.1-201ENST00000402155 436 ntBASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 AL662874.1-201ENST00000426065 230 ntBASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 AL353898.1-201ENST00000444055 238 ntBASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC7.32□□□□□ -1.24
CHMP4AQ9BY43 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC7.32□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms