Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 CHD8-201ENST00000399982 8229 ntAPPRIS ALT2 TSL 1 (best) BASIC7.85□□□□□ -1.15
HLA-CQ95604 ASCC1-202ENST00000317168 2002 ntAPPRIS P1 TSL 2 BASIC7.85□□□□□ -1.15
HLA-CQ95604 LIMCH1-215ENST00000512632 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC7.84□□□□□ -1.15
HLA-CQ95604 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC7.84□□□□□ -1.15
HLA-CQ95604 SLC16A4-206ENST00000472422 2420 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
HLA-CQ95604 TMEM45A-201ENST00000323523 1567 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
HLA-CQ95604 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC7.84□□□□□ -1.15
HLA-CQ95604 GC-201ENST00000273951 1972 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
HLA-CQ95604 OR1D2-202ENST00000641064 4882 ntAPPRIS P1 BASIC7.84□□□□□ -1.15
HLA-CQ95604 AL049634.1-201ENST00000453770 1720 ntBASIC7.84□□□□□ -1.15
HLA-CQ95604 RETREG1-202ENST00000399793 3145 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
HLA-CQ95604 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
HLA-CQ95604 TREML2-201ENST00000483722 3302 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
HLA-CQ95604 NHLRC3-202ENST00000379600 3549 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
HLA-CQ95604 DCLRE1B-201ENST00000369563 3940 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
HLA-CQ95604 CORO1C-202ENST00000420959 3921 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
HLA-CQ95604 OXNAD1-207ENST00000606098 2288 ntAPPRIS ALT2 TSL 5 BASIC7.84□□□□□ -1.15
HLA-CQ95604 SLC16A12-201ENST00000371790 4617 ntAPPRIS P1 TSL 2 BASIC7.84□□□□□ -1.15
HLA-CQ95604 DHFR2-202ENST00000394221 4038 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
HLA-CQ95604 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC7.84□□□□□ -1.15
HLA-CQ95604 OR11H4-201ENST00000315409 1082 ntBASIC7.84□□□□□ -1.15
HLA-CQ95604 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC7.84□□□□□ -1.15
HLA-CQ95604 SNORA33.2-201ENST00000365413 134 ntBASIC7.84□□□□□ -1.15
HLA-CQ95604 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC7.84□□□□□ -1.15
HLA-CQ95604 RAD23BP1-201ENST00000421404 1227 ntBASIC7.84□□□□□ -1.15
HLA-CQ95604 AL592293.2-201ENST00000422292 996 ntBASIC7.84□□□□□ -1.15
HLA-CQ95604 AP000431.1-201ENST00000424219 469 ntTSL 3 BASIC7.84□□□□□ -1.15
HLA-CQ95604 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC7.84□□□□□ -1.15
HLA-CQ95604 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC7.84□□□□□ -1.15
HLA-CQ95604 AL022237.1-201ENST00000446663 358 ntBASIC7.84□□□□□ -1.15
HLA-CQ95604 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC7.84□□□□□ -1.15
HLA-CQ95604 AC118758.1-202ENST00000454719 225 ntBASIC7.84□□□□□ -1.15
HLA-CQ95604 AC012158.1-202ENST00000482431 1132 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
HLA-CQ95604 RPL29P23-201ENST00000486188 442 ntBASIC7.84□□□□□ -1.15
HLA-CQ95604 RN7SL568P-201ENST00000493069 298 ntBASIC7.84□□□□□ -1.15
HLA-CQ95604 ABHD10-204ENST00000494817 801 ntTSL 3 BASIC7.84□□□□□ -1.15
HLA-CQ95604 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC7.84□□□□□ -1.15
HLA-CQ95604 NPY6R-201ENST00000503807 1112 ntBASIC7.84□□□□□ -1.15
HLA-CQ95604 OR52H2P-201ENST00000514607 902 ntBASIC7.84□□□□□ -1.15
HLA-CQ95604 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC7.84□□□□□ -1.15
HLA-CQ95604 CARSP2-201ENST00000520688 277 ntBASIC7.84□□□□□ -1.15
HLA-CQ95604 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC7.84□□□□□ -1.15
HLA-CQ95604 SDHCP4-201ENST00000532834 510 ntBASIC7.84□□□□□ -1.15
HLA-CQ95604 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC7.84□□□□□ -1.15
HLA-CQ95604 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC7.84□□□□□ -1.15
HLA-CQ95604 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC7.84□□□□□ -1.15
HLA-CQ95604 LINC00663-206ENST00000589910 732 ntTSL 2 BASIC7.84□□□□□ -1.15
HLA-CQ95604 AC008737.2-201ENST00000599446 118 ntBASIC7.84□□□□□ -1.15
HLA-CQ95604 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC7.84□□□□□ -1.15
HLA-CQ95604 AC092032.1-201ENST00000603090 165 ntBASIC7.84□□□□□ -1.15
HLA-CQ95604 MIR8075-201ENST00000614354 80 ntBASIC7.84□□□□□ -1.15
HLA-CQ95604 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC7.84□□□□□ -1.15
HLA-CQ95604 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC7.84□□□□□ -1.15
HLA-CQ95604 AC211433.3-201ENST00000623770 375 ntBASIC7.84□□□□□ -1.15
HLA-CQ95604 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC7.84□□□□□ -1.15
HLA-CQ95604 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC7.84□□□□□ -1.15
HLA-CQ95604 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC7.84□□□□□ -1.15
HLA-CQ95604 MEPE-204ENST00000497649 2226 ntAPPRIS ALT2 TSL 5 BASIC7.84□□□□□ -1.15
HLA-CQ95604 CLDN2-203ENST00000541806 3150 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
HLA-CQ95604 SIDT2-219ENST00000620360 3924 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
HLA-CQ95604 JAKMIP2-201ENST00000265272 6001 ntAPPRIS P3 TSL 1 (best) BASIC7.84□□□□□ -1.15
HLA-CQ95604 AL162632.3-201ENST00000566976 1625 ntBASIC7.84□□□□□ -1.15
HLA-CQ95604 MAPK10-240ENST00000639175 2596 ntAPPRIS P2 TSL 5 BASIC7.84□□□□□ -1.15
HLA-CQ95604 RGS4-204ENST00000421743 3311 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
HLA-CQ95604 CD86-202ENST00000330540 2708 ntAPPRIS P3 TSL 1 (best) BASIC7.84□□□□□ -1.15
HLA-CQ95604 SNCAIP-201ENST00000261367 4986 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
HLA-CQ95604 ERG-205ENST00000398910 4954 ntTSL 5 BASIC7.84□□□□□ -1.15
HLA-CQ95604 MTF1-201ENST00000373036 7972 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
HLA-CQ95604 HERC3-201ENST00000264345 4764 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
HLA-CQ95604 ZNF639-201ENST00000326361 6064 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
HLA-CQ95604 NUMB-217ENST00000555738 1553 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
HLA-CQ95604 MAPK10-204ENST00000395157 2665 ntTSL 5 BASIC7.84□□□□□ -1.16
HLA-CQ95604 CLASP2-213ENST00000480013 5972 ntTSL 5 BASIC7.84□□□□□ -1.16
HLA-CQ95604 AL365475.1-201ENST00000565135 1949 ntBASIC7.84□□□□□ -1.16
HLA-CQ95604 AC007996.1-201ENST00000620414 2821 ntBASIC7.84□□□□□ -1.16
HLA-CQ95604 UCA1-201ENST00000397381 2299 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
HLA-CQ95604 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC7.83□□□□□ -1.16
HLA-CQ95604 STARD5-201ENST00000302824 4871 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
HLA-CQ95604 ZC3H6-202ENST00000409871 11542 ntAPPRIS P1 TSL 2 BASIC7.83□□□□□ -1.16
HLA-CQ95604 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
HLA-CQ95604 FOXJ3-205ENST00000372573 5309 ntAPPRIS P3 TSL 2 BASIC7.83□□□□□ -1.16
HLA-CQ95604 MCM8-202ENST00000378883 3574 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
HLA-CQ95604 ADH4-209ENST00000508393 2151 ntTSL 2 BASIC7.83□□□□□ -1.16
HLA-CQ95604 CWF19L1-201ENST00000354105 1815 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
HLA-CQ95604 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC7.83□□□□□ -1.16
HLA-CQ95604 NMD3P1-201ENST00000439704 1488 ntBASIC7.83□□□□□ -1.16
HLA-CQ95604 MUC3A-203ENST00000483366 9944 ntAPPRIS ALT2 TSL 5 BASIC7.83□□□□□ -1.16
HLA-CQ95604 LINC01915-201ENST00000577994 2321 ntTSL 2 BASIC7.83□□□□□ -1.16
HLA-CQ95604 AC068733.1-202ENST00000531479 2456 ntBASIC7.83□□□□□ -1.16
HLA-CQ95604 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
HLA-CQ95604 OR5J1P-201ENST00000313544 939 ntBASIC7.83□□□□□ -1.16
HLA-CQ95604 Y_RNA.159-201ENST00000363674 87 ntBASIC7.83□□□□□ -1.16
HLA-CQ95604 RN7SKP15-201ENST00000364742 309 ntBASIC7.83□□□□□ -1.16
HLA-CQ95604 RNA5SP238-201ENST00000365464 120 ntBASIC7.83□□□□□ -1.16
HLA-CQ95604 SNORD42.2-201ENST00000365570 69 ntBASIC7.83□□□□□ -1.16
HLA-CQ95604 Y_RNA.401-201ENST00000383965 117 ntBASIC7.83□□□□□ -1.16
HLA-CQ95604 AL390316.1-201ENST00000406279 553 ntBASIC7.83□□□□□ -1.16
HLA-CQ95604 RN7SKP205-201ENST00000410999 307 ntBASIC7.83□□□□□ -1.16
HLA-CQ95604 AC073264.1-201ENST00000411508 416 ntBASIC7.83□□□□□ -1.16
HLA-CQ95604 MRPL50P2-201ENST00000416821 482 ntBASIC7.83□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms