Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC233289.1-201ENST00000403700 508 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 MRM2-202ENST00000407040 582 ntTSL 3 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 MTND4LP13-201ENST00000425022 298 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC009784.1-201ENST00000426484 460 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 DSTNP5-201ENST00000427921 523 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 FMO7P-201ENST00000436045 768 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 GSTA7P-201ENST00000438425 448 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AL512593.1-201ENST00000444758 779 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AL591363.1-201ENST00000450091 483 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AL672167.3-201ENST00000465951 960 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 UBFD1P1-201ENST00000473259 814 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 STRADBP1-201ENST00000478954 1281 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 PDCL3P4-201ENST00000489621 720 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 CCDC11P1-201ENST00000503137 1162 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 MTND3P3-201ENST00000505004 126 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AL671862.1-201ENST00000515851 349 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 SNORA70.11-201ENST00000515987 138 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 SNORA70.13-201ENST00000516116 138 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 HMGB1P46-201ENST00000520062 610 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC134349.2-201ENST00000535136 910 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC092865.1-201ENST00000544395 1023 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 RNU4ATAC-201ENST00000580972 127 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC124856.1-201ENST00000600819 896 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC098483.2-201ENST00000603158 454 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC104785.1-201ENST00000603220 588 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 MIR6810-201ENST00000622701 70 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AP002371.2-201ENST00000624450 503 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 SAMMSON-209ENST00000641222 1100 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC140134.1-201ENST00000511830 3544 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 HSPA8P17-201ENST00000427029 1382 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 SAMM50P1-201ENST00000455403 1399 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 C4BPAP1-201ENST00000415474 1893 ntBASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AC093671.1-201ENST00000624981 2929 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AC016745.2-201ENST00000608834 3443 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AC103591.2-201ENST00000265259 766 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AC010132.2-201ENST00000295493 1043 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 RNA5SP346-201ENST00000363541 121 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 RNU105B-201ENST00000364478 208 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AL096711.1-201ENST00000404780 554 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms