Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC7.32□□□□□ -1.24
MSH6P52701 AL590392.1-201ENST00000604960 446 ntBASIC7.32□□□□□ -1.24
MSH6P52701 AL352984.2-202ENST00000613699 155 ntBASIC7.32□□□□□ -1.24
MSH6P52701 AL359757.1-201ENST00000623176 255 ntBASIC7.32□□□□□ -1.24
MSH6P52701 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
MSH6P52701 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC7.31□□□□□ -1.24
MSH6P52701 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC7.31□□□□□ -1.24
MSH6P52701 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC7.31□□□□□ -1.24
MSH6P52701 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
MSH6P52701 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC7.31□□□□□ -1.24
MSH6P52701 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
MSH6P52701 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
MSH6P52701 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
MSH6P52701 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC7.31□□□□□ -1.24
MSH6P52701 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
MSH6P52701 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC7.31□□□□□ -1.24
MSH6P52701 FAM3C2-201ENST00000312214 681 ntBASIC7.31□□□□□ -1.24
MSH6P52701 FHIT-201ENST00000341848 174 ntTSL 3 BASIC7.31□□□□□ -1.24
MSH6P52701 RN7SKP227-201ENST00000364445 330 ntBASIC7.31□□□□□ -1.24
MSH6P52701 IL6-206ENST00000407492 926 ntTSL 3 BASIC7.31□□□□□ -1.24
MSH6P52701 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC7.31□□□□□ -1.24
MSH6P52701 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC7.31□□□□□ -1.24
MSH6P52701 AL359265.2-201ENST00000434367 631 ntBASIC7.31□□□□□ -1.24
MSH6P52701 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC7.31□□□□□ -1.24
MSH6P52701 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC7.31□□□□□ -1.24
MSH6P52701 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC7.31□□□□□ -1.24
MSH6P52701 RPL7AP28-201ENST00000464513 571 ntBASIC7.31□□□□□ -1.24
MSH6P52701 AC058823.1-201ENST00000485315 474 ntBASIC7.31□□□□□ -1.24
MSH6P52701 AC111000.3-201ENST00000508057 576 ntBASIC7.31□□□□□ -1.24
MSH6P52701 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC7.31□□□□□ -1.24
MSH6P52701 AC137627.1-201ENST00000545761 289 ntBASIC7.31□□□□□ -1.24
MSH6P52701 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC7.31□□□□□ -1.24
MSH6P52701 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC7.31□□□□□ -1.24
MSH6P52701 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC7.31□□□□□ -1.24
MSH6P52701 AC011453.2-201ENST00000603737 729 ntBASIC7.31□□□□□ -1.24
MSH6P52701 AL445423.1-201ENST00000609941 536 ntBASIC7.31□□□□□ -1.24
MSH6P52701 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
MSH6P52701 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC7.31□□□□□ -1.24
MSH6P52701 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
MSH6P52701 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
MSH6P52701 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
MSH6P52701 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
MSH6P52701 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC7.31□□□□□ -1.24
MSH6P52701 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
MSH6P52701 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC7.3□□□□□ -1.24
MSH6P52701 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
MSH6P52701 AC022893.2-201ENST00000564832 3296 ntBASIC7.3□□□□□ -1.24
MSH6P52701 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
MSH6P52701 AL731532.1-201ENST00000623972 4236 ntBASIC7.3□□□□□ -1.24
MSH6P52701 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC7.3□□□□□ -1.24
MSH6P52701 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
MSH6P52701 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC7.3□□□□□ -1.24
MSH6P52701 AC068870.1-201ENST00000563737 2455 ntBASIC7.3□□□□□ -1.24
MSH6P52701 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC7.3□□□□□ -1.24
MSH6P52701 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
MSH6P52701 AC020656.2-201ENST00000613291 5309 ntBASIC7.3□□□□□ -1.24
MSH6P52701 RNA5-8SP7-201ENST00000363443 155 ntBASIC7.3□□□□□ -1.24
MSH6P52701 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
MSH6P52701 MIR1193-201ENST00000408109 78 ntBASIC7.3□□□□□ -1.24
MSH6P52701 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC7.3□□□□□ -1.24
MSH6P52701 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC7.3□□□□□ -1.24
MSH6P52701 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC7.3□□□□□ -1.24
MSH6P52701 AC007559.1-201ENST00000428736 355 ntBASIC7.3□□□□□ -1.24
MSH6P52701 KRT8P51-201ENST00000438938 274 ntBASIC7.3□□□□□ -1.24
MSH6P52701 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC7.3□□□□□ -1.24
MSH6P52701 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC7.3□□□□□ -1.24
MSH6P52701 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC7.3□□□□□ -1.24
MSH6P52701 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC7.3□□□□□ -1.24
MSH6P52701 RBMY2TP-201ENST00000451162 947 ntBASIC7.3□□□□□ -1.24
MSH6P52701 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC7.3□□□□□ -1.24
MSH6P52701 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC7.3□□□□□ -1.24
MSH6P52701 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC7.3□□□□□ -1.24
MSH6P52701 RGS5-219ENST00000528019 512 ntTSL 4 BASIC7.3□□□□□ -1.24
MSH6P52701 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC7.3□□□□□ -1.24
MSH6P52701 AC103792.1-201ENST00000603591 919 ntBASIC7.3□□□□□ -1.24
MSH6P52701 AC021422.1-201ENST00000621212 473 ntBASIC7.3□□□□□ -1.24
MSH6P52701 FTO-223ENST00000640179 210 ntTSL 5 BASIC7.3□□□□□ -1.24
MSH6P52701 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
MSH6P52701 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC7.3□□□□□ -1.24
MSH6P52701 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC7.29□□□□□ -1.24
MSH6P52701 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC7.29□□□□□ -1.24
MSH6P52701 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC7.29□□□□□ -1.24
MSH6P52701 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
MSH6P52701 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
MSH6P52701 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC7.29□□□□□ -1.24
MSH6P52701 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
MSH6P52701 DMD-211ENST00000378707 7410 ntTSL 5 BASIC7.29□□□□□ -1.24
MSH6P52701 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC7.29□□□□□ -1.24
MSH6P52701 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
MSH6P52701 EYA4-206ENST00000431403 2154 ntTSL 5 BASIC7.29□□□□□ -1.24
MSH6P52701 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC7.29□□□□□ -1.24
MSH6P52701 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
MSH6P52701 AC004975.1-201ENST00000428733 208 ntBASIC7.29□□□□□ -1.24
MSH6P52701 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC7.29□□□□□ -1.24
MSH6P52701 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC7.29□□□□□ -1.24
MSH6P52701 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC7.29□□□□□ -1.24
MSH6P52701 AC093824.1-201ENST00000508796 343 ntBASIC7.29□□□□□ -1.24
MSH6P52701 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC7.29□□□□□ -1.24
MSH6P52701 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC7.29□□□□□ -1.24
MSH6P52701 NPM1P42-201ENST00000560329 862 ntBASIC7.29□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms