Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 OR10A4-201ENST00000379829 995 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
MSX2P35548 AL079341.1-201ENST00000404701 1207 ntBASIC5.9□□□□□ -1.46
MSX2P35548 AC084030.1-202ENST00000413385 880 ntTSL 5 BASIC5.9□□□□□ -1.46
MSX2P35548 RANP6-201ENST00000413691 644 ntBASIC5.9□□□□□ -1.46
MSX2P35548 AC007349.3-201ENST00000415356 872 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
MSX2P35548 ZNF736P2Y-201ENST00000416040 1279 ntBASIC5.9□□□□□ -1.46
MSX2P35548 EIF4A1P1-201ENST00000420241 934 ntBASIC5.9□□□□□ -1.46
MSX2P35548 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC5.9□□□□□ -1.46
MSX2P35548 C8orf59P1-201ENST00000429930 303 ntBASIC5.9□□□□□ -1.46
MSX2P35548 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC5.9□□□□□ -1.46
MSX2P35548 AC019211.1-201ENST00000432993 754 ntTSL 3 BASIC5.9□□□□□ -1.46
MSX2P35548 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC5.9□□□□□ -1.46
MSX2P35548 AL606804.1-201ENST00000435333 538 ntTSL 3 BASIC5.9□□□□□ -1.46
MSX2P35548 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC5.9□□□□□ -1.46
MSX2P35548 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC5.9□□□□□ -1.46
MSX2P35548 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC5.9□□□□□ -1.46
MSX2P35548 AC083855.1-201ENST00000440041 258 ntBASIC5.9□□□□□ -1.46
MSX2P35548 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
MSX2P35548 AC009961.3-201ENST00000449832 765 ntBASIC5.9□□□□□ -1.46
MSX2P35548 CCNJP1-201ENST00000450600 1149 ntBASIC5.9□□□□□ -1.46
MSX2P35548 AC006026.3-201ENST00000454029 143 ntTSL 3 BASIC5.9□□□□□ -1.46
MSX2P35548 AC078785.1-205ENST00000491578 482 ntTSL 4 BASIC5.9□□□□□ -1.46
MSX2P35548 AC093890.1-201ENST00000502554 540 ntBASIC5.9□□□□□ -1.46
MSX2P35548 AC022126.1-201ENST00000502995 593 ntTSL 4 BASIC5.9□□□□□ -1.46
MSX2P35548 MTATP6P1-201ENST00000514057 681 ntBASIC5.9□□□□□ -1.46
MSX2P35548 AP005902.2-201ENST00000518393 307 ntBASIC5.9□□□□□ -1.46
MSX2P35548 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
MSX2P35548 COX6C-210ENST00000524245 513 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.46
MSX2P35548 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC5.9□□□□□ -1.46
MSX2P35548 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
MSX2P35548 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
MSX2P35548 AL138974.1-201ENST00000551227 741 ntTSL 5 BASIC5.9□□□□□ -1.46
MSX2P35548 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC5.9□□□□□ -1.46
MSX2P35548 HMGN2P47-201ENST00000559378 272 ntBASIC5.9□□□□□ -1.46
MSX2P35548 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC5.9□□□□□ -1.46
MSX2P35548 AC007950.1-201ENST00000560465 615 ntTSL 3 BASIC5.9□□□□□ -1.46
MSX2P35548 AGGF1P8-201ENST00000562979 1000 ntBASIC5.9□□□□□ -1.46
MSX2P35548 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC5.9□□□□□ -1.46
MSX2P35548 NDUFA5P11-201ENST00000567995 343 ntBASIC5.9□□□□□ -1.46
MSX2P35548 AC015688.2-201ENST00000584523 262 ntBASIC5.9□□□□□ -1.46
MSX2P35548 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.9□□□□□ -1.46
MSX2P35548 AC006305.3-201ENST00000590589 454 ntTSL 2 BASIC5.9□□□□□ -1.46
MSX2P35548 AC020916.2-201ENST00000591242 360 ntBASIC5.9□□□□□ -1.46
MSX2P35548 AP003465.2-201ENST00000602571 373 ntBASIC5.9□□□□□ -1.46
MSX2P35548 HNRNPA3P9-201ENST00000604913 979 ntBASIC5.9□□□□□ -1.46
MSX2P35548 AC016877.3-201ENST00000606778 504 ntBASIC5.9□□□□□ -1.46
MSX2P35548 AP002360.4-201ENST00000606980 481 ntBASIC5.9□□□□□ -1.46
MSX2P35548 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC5.9□□□□□ -1.46
MSX2P35548 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC5.9□□□□□ -1.46
MSX2P35548 AC027506.1-201ENST00000621395 198 ntBASIC5.9□□□□□ -1.46
MSX2P35548 AC079248.2-201ENST00000623779 326 ntBASIC5.9□□□□□ -1.46
MSX2P35548 RMDN2-AS1-207ENST00000627614 765 ntTSL 5 BASIC5.9□□□□□ -1.46
MSX2P35548 AC092192.1-201ENST00000633154 1018 ntBASIC5.9□□□□□ -1.46
MSX2P35548 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC5.9□□□□□ -1.46
MSX2P35548 AP000550.3-201ENST00000637734 379 ntBASIC5.9□□□□□ -1.46
MSX2P35548 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.9□□□□□ -1.46
MSX2P35548 CASC19-260ENST00000641828 2001 ntBASIC5.9□□□□□ -1.47
MSX2P35548 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
MSX2P35548 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
MSX2P35548 CYP51A1-204ENST00000450723 1729 ntTSL 2 BASIC5.9□□□□□ -1.47
MSX2P35548 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC5.9□□□□□ -1.47
MSX2P35548 C2CD6-201ENST00000286195 2104 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.47
MSX2P35548 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
MSX2P35548 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.47
MSX2P35548 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.47
MSX2P35548 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC5.9□□□□□ -1.47
MSX2P35548 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.9□□□□□ -1.47
MSX2P35548 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
MSX2P35548 AL356317.1-201ENST00000396110 1436 ntBASIC5.9□□□□□ -1.47
MSX2P35548 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
MSX2P35548 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
MSX2P35548 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSX2P35548 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
MSX2P35548 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSX2P35548 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSX2P35548 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
MSX2P35548 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSX2P35548 AC109446.4-201ENST00000623235 2755 ntBASIC5.89□□□□□ -1.47
MSX2P35548 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
MSX2P35548 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSX2P35548 FAM133CP-201ENST00000332869 704 ntBASIC5.89□□□□□ -1.47
MSX2P35548 CGA-201ENST00000369582 729 ntTSL 5 BASIC5.89□□□□□ -1.47
MSX2P35548 RNU6-224P-201ENST00000384055 107 ntBASIC5.89□□□□□ -1.47
MSX2P35548 U6.112-201ENST00000384129 70 ntBASIC5.89□□□□□ -1.47
MSX2P35548 RNU1-56P-201ENST00000391303 164 ntBASIC5.89□□□□□ -1.47
MSX2P35548 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.89□□□□□ -1.47
MSX2P35548 RPL18AP14-201ENST00000417685 526 ntBASIC5.89□□□□□ -1.47
MSX2P35548 AL590095.1-201ENST00000420049 436 ntTSL 3 BASIC5.89□□□□□ -1.47
MSX2P35548 GLUD1P9-201ENST00000420997 1173 ntBASIC5.89□□□□□ -1.47
MSX2P35548 AC106870.2-201ENST00000421411 691 ntTSL 3 BASIC5.89□□□□□ -1.47
MSX2P35548 PNRC2P1-201ENST00000423940 420 ntBASIC5.89□□□□□ -1.47
MSX2P35548 IGLV3-4-201ENST00000432300 244 ntBASIC5.89□□□□□ -1.47
MSX2P35548 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC5.89□□□□□ -1.47
MSX2P35548 AP001048.1-201ENST00000436359 280 ntTSL 2 BASIC5.89□□□□□ -1.47
MSX2P35548 FGF7P5-201ENST00000441829 291 ntBASIC5.89□□□□□ -1.47
MSX2P35548 TAF9P1-201ENST00000445421 515 ntBASIC5.89□□□□□ -1.47
MSX2P35548 RPL34P26-201ENST00000445636 354 ntBASIC5.89□□□□□ -1.47
MSX2P35548 UBBP5-201ENST00000446970 266 ntBASIC5.89□□□□□ -1.47
MSX2P35548 AL121578.2-201ENST00000448797 447 ntBASIC5.89□□□□□ -1.47
MSX2P35548 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms