Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL8A1P27658 RPS7-204ENST00000407445 833 ntTSL 2 BASIC6.63□□□□□ -1.35
COL8A1P27658 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL8A1P27658 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
COL8A1P27658 AC109780.2-201ENST00000413467 845 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 ECT2-206ENST00000417960 4363 ntAPPRIS ALT1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL8A1P27658 AC106869.1-203ENST00000419035 1892 ntTSL 2 BASIC6.63□□□□□ -1.35
COL8A1P27658 AL645937.1-202ENST00000421799 937 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
COL8A1P27658 RPS24P13-201ENST00000442520 397 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 VN1R38P-201ENST00000450265 887 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 AL139156.3-201ENST00000454802 394 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 RNU6-420P-201ENST00000458780 107 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 RPL23AP37-201ENST00000479658 549 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 RN7SL502P-201ENST00000481857 290 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 AP005202.1-201ENST00000489915 867 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 AC008040.4-201ENST00000494834 768 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 AL353807.3-201ENST00000500626 2505 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 NPY6R-201ENST00000503807 1112 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC6.63□□□□□ -1.35
COL8A1P27658 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC6.63□□□□□ -1.35
COL8A1P27658 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC6.63□□□□□ -1.35
COL8A1P27658 RNU6-1225P-201ENST00000516336 65 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 Y_RNA.691-201ENST00000516611 103 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 RN7SKP70-201ENST00000516655 271 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 SLC30A8-208ENST00000521243 1393 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL8A1P27658 KLF5-205ENST00000539231 2951 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL8A1P27658 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC6.63□□□□□ -1.35
COL8A1P27658 LINC02312-201ENST00000555187 3046 ntTSL 2 BASIC6.63□□□□□ -1.35
COL8A1P27658 AC010287.1-201ENST00000566916 357 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 LINC01974-201ENST00000575126 494 ntTSL 3 BASIC6.63□□□□□ -1.35
COL8A1P27658 RPL27-205ENST00000589037 585 ntAPPRIS P1 TSL 3 BASIC6.63□□□□□ -1.35
COL8A1P27658 AC140658.6-201ENST00000603958 201 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 AL356056.3-201ENST00000605984 551 ntTSL 3 BASIC6.63□□□□□ -1.35
COL8A1P27658 AC005303.1-201ENST00000607906 740 ntTSL 5 BASIC6.63□□□□□ -1.35
COL8A1P27658 AP005137.2-201ENST00000609238 400 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC6.63□□□□□ -1.35
COL8A1P27658 AC234782.5-201ENST00000617723 324 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 DLEU1_2.1-201ENST00000617920 342 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 MIR6849-201ENST00000618543 69 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 AC211486.4-201ENST00000621495 113 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 AC012629.3-201ENST00000623397 328 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC6.63□□□□□ -1.35
COL8A1P27658 AL049833.3-201ENST00000623920 3738 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 AC090617.10-201ENST00000624308 134 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 AC007342.7-201ENST00000624610 2337 ntBASIC6.63□□□□□ -1.35
COL8A1P27658 OXSM-209ENST00000626005 309 ntTSL 3 BASIC6.63□□□□□ -1.35
COL8A1P27658 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC6.63□□□□□ -1.35
COL8A1P27658 CNOT7-201ENST00000361272 6913 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL8A1P27658 KIF4A-201ENST00000374403 4348 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL8A1P27658 CD274-202ENST00000381577 3644 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL8A1P27658 CACNA1D-224ENST00000637424 6856 ntAPPRIS ALT2 TSL 5 BASIC6.63□□□□□ -1.35
COL8A1P27658 RRM2-213ENST00000641198 3431 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
COL8A1P27658 RAB5B-210ENST00000553116 3322 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL8A1P27658 NUP214-208ENST00000483497 3275 ntTSL 2 BASIC6.63□□□□□ -1.35
COL8A1P27658 C1S-205ENST00000406697 3076 ntAPPRIS P1 TSL 2 BASIC6.63□□□□□ -1.35
COL8A1P27658 OLFML1-201ENST00000329293 2792 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL8A1P27658 FGD4-202ENST00000427716 8242 ntAPPRIS P1 TSL 2 BASIC6.63□□□□□ -1.35
COL8A1P27658 KIT-201ENST00000288135 5186 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL8A1P27658 SLC9A6-214ENST00000637581 4872 ntTSL 5 BASIC6.62□□□□□ -1.35
COL8A1P27658 ATP2C1-208ENST00000504948 4714 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL8A1P27658 AC132825.1-201ENST00000463573 2247 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 OR2A3P-202ENST00000641249 1776 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 C2CD5-218ENST00000545552 3471 ntTSL 2 BASIC6.62□□□□□ -1.35
COL8A1P27658 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC6.62□□□□□ -1.35
COL8A1P27658 R3HCC1L-203ENST00000370584 3372 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
COL8A1P27658 IL5RA-206ENST00000430514 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL8A1P27658 AC011493.1-201ENST00000596753 1632 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC6.62□□□□□ -1.35
COL8A1P27658 ZNF577-201ENST00000301399 3074 ntAPPRIS P3 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL8A1P27658 ZNF234-201ENST00000426739 4551 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL8A1P27658 SF3A3P1-201ENST00000446317 1477 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 NEK10-201ENST00000295720 2871 ntTSL 2 BASIC6.62□□□□□ -1.35
COL8A1P27658 NUMB-205ENST00000544991 2757 ntTSL 5 BASIC6.62□□□□□ -1.35
COL8A1P27658 KIAA1210-201ENST00000402510 7824 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
COL8A1P27658 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL8A1P27658 OR4K1-201ENST00000285600 1076 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
COL8A1P27658 METTL21EP-201ENST00000298105 713 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 Y_RNA.149-201ENST00000363558 117 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 NR1I3-203ENST00000367981 1076 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL8A1P27658 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
COL8A1P27658 Y_RNA.395-201ENST00000383945 109 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 TRAV12-3-201ENST00000390442 399 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
COL8A1P27658 LDHAP5-201ENST00000394996 622 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 AL121977.1-201ENST00000401636 979 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 AC004690.1-201ENST00000418216 328 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 FTOP1-201ENST00000419363 861 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC6.62□□□□□ -1.35
COL8A1P27658 RPL7AP51-201ENST00000422016 760 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 SPATA20P1-201ENST00000423089 438 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 AL773545.1-201ENST00000425632 347 ntTSL 5 BASIC6.62□□□□□ -1.35
COL8A1P27658 AC234064.1-201ENST00000436312 247 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 SEPT14P3-201ENST00000439401 183 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 RPL5P25-201ENST00000441148 775 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 PMS2P9-201ENST00000441237 515 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC6.62□□□□□ -1.35
COL8A1P27658 AL732372.2-207ENST00000445840 183 ntBASIC6.62□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms