Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AP001521.2-201ENST00000608772 546 ntBASIC6.37□□□□□ -1.39
COL5A3P25940 uc_338.7-201ENST00000621834 124 ntBASIC6.37□□□□□ -1.39
COL5A3P25940 AL359757.1-201ENST00000623176 255 ntBASIC6.37□□□□□ -1.39
COL5A3P25940 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC6.37□□□□□ -1.39
COL5A3P25940 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL5A3P25940 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL5A3P25940 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL5A3P25940 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL5A3P25940 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL5A3P25940 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC6.37□□□□□ -1.39
COL5A3P25940 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC6.37□□□□□ -1.39
COL5A3P25940 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL5A3P25940 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL5A3P25940 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
COL5A3P25940 DSC3-202ENST00000434452 6978 ntTSL 5 BASIC6.37□□□□□ -1.39
COL5A3P25940 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
COL5A3P25940 AC009480.2-201ENST00000422916 432 ntBASIC6.36□□□□□ -1.39
COL5A3P25940 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL5A3P25940 AC005154.2-201ENST00000438110 379 ntBASIC6.36□□□□□ -1.39
COL5A3P25940 AP002981.1-201ENST00000517692 975 ntBASIC6.36□□□□□ -1.39
COL5A3P25940 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC6.36□□□□□ -1.39
COL5A3P25940 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC6.36□□□□□ -1.39
COL5A3P25940 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC6.36□□□□□ -1.39
COL5A3P25940 AL121873.1-201ENST00000616013 524 ntBASIC6.36□□□□□ -1.39
COL5A3P25940 AC005618.4-201ENST00000625053 554 ntBASIC6.36□□□□□ -1.39
COL5A3P25940 OR52H1-202ENST00000641796 1061 ntBASIC6.36□□□□□ -1.39
COL5A3P25940 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL5A3P25940 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL5A3P25940 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL5A3P25940 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL5A3P25940 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC6.36□□□□□ -1.39
COL5A3P25940 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL5A3P25940 Z98755.1-201ENST00000407015 1384 ntBASIC6.36□□□□□ -1.39
COL5A3P25940 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL5A3P25940 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC6.36□□□□□ -1.39
COL5A3P25940 MON2-202ENST00000393630 13275 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL5A3P25940 NHLRC2-201ENST00000369301 11051 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
COL5A3P25940 CASC19-243ENST00000641588 1546 ntBASIC6.36□□□□□ -1.39
COL5A3P25940 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC6.36□□□□□ -1.39
COL5A3P25940 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL5A3P25940 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL5A3P25940 RN7SKP153-201ENST00000365026 316 ntBASIC6.36□□□□□ -1.39
COL5A3P25940 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL5A3P25940 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
COL5A3P25940 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC6.36□□□□□ -1.39
COL5A3P25940 RN7SL319P-201ENST00000480656 221 ntBASIC6.36□□□□□ -1.39
COL5A3P25940 RN7SKP21-201ENST00000516503 220 ntBASIC6.36□□□□□ -1.39
COL5A3P25940 AC087360.1-201ENST00000518788 616 ntBASIC6.36□□□□□ -1.39
COL5A3P25940 AC084824.2-201ENST00000548906 345 ntBASIC6.36□□□□□ -1.39
COL5A3P25940 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC6.36□□□□□ -1.39
COL5A3P25940 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC6.36□□□□□ -1.39
COL5A3P25940 HEATR1-202ENST00000366581 6538 ntTSL 5 BASIC6.36□□□□□ -1.39
COL5A3P25940 HYDIN-206ENST00000393567 15719 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
COL5A3P25940 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
COL5A3P25940 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A3P25940 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
COL5A3P25940 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6.35□□□□□ -1.39
COL5A3P25940 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A3P25940 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A3P25940 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC6.35□□□□□ -1.39
COL5A3P25940 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A3P25940 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A3P25940 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC6.35□□□□□ -1.39
COL5A3P25940 OR4K15-201ENST00000305051 1216 ntBASIC6.35□□□□□ -1.39
COL5A3P25940 Z97832.1-201ENST00000402490 328 ntBASIC6.35□□□□□ -1.39
COL5A3P25940 MAST4-207ENST00000407621 559 ntTSL 2 BASIC6.35□□□□□ -1.39
COL5A3P25940 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC6.35□□□□□ -1.39
COL5A3P25940 AF186996.5-201ENST00000418098 904 ntBASIC6.35□□□□□ -1.39
COL5A3P25940 AC090804.1-201ENST00000448870 490 ntBASIC6.35□□□□□ -1.39
COL5A3P25940 PSAT1P4-201ENST00000466500 526 ntBASIC6.35□□□□□ -1.39
COL5A3P25940 AC111000.3-201ENST00000508057 576 ntBASIC6.35□□□□□ -1.39
COL5A3P25940 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC6.35□□□□□ -1.39
COL5A3P25940 AC233699.1-201ENST00000569955 1168 ntBASIC6.35□□□□□ -1.39
COL5A3P25940 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC6.35□□□□□ -1.39
COL5A3P25940 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC6.35□□□□□ -1.39
COL5A3P25940 AP001267.4-201ENST00000602598 545 ntBASIC6.35□□□□□ -1.39
COL5A3P25940 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC6.35□□□□□ -1.39
COL5A3P25940 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC6.35□□□□□ -1.39
COL5A3P25940 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
COL5A3P25940 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A3P25940 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A3P25940 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A3P25940 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A3P25940 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
COL5A3P25940 HYDIN2-203ENST00000614586 13885 ntBASIC6.35□□□□□ -1.39
COL5A3P25940 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A3P25940 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC6.35□□□□□ -1.39
COL5A3P25940 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A3P25940 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A3P25940 LARS-201ENST00000274562 2213 ntTSL 2 BASIC6.34□□□□□ -1.39
COL5A3P25940 MAPK6PS2-201ENST00000379571 2060 ntBASIC6.34□□□□□ -1.39
COL5A3P25940 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL5A3P25940 SPRYD4-201ENST00000338146 10779 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL5A3P25940 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL5A3P25940 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
COL5A3P25940 DNAH17-202ENST00000585328 13708 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
COL5A3P25940 RPS16P5-201ENST00000406501 404 ntBASIC6.34□□□□□ -1.39
COL5A3P25940 RPL19P16-201ENST00000433839 588 ntBASIC6.34□□□□□ -1.39
COL5A3P25940 AL691482.1-201ENST00000453255 87 ntBASIC6.34□□□□□ -1.39
COL5A3P25940 RN7SL189P-201ENST00000468631 289 ntBASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 164.5 ms