Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC078899.1-201ENST00000521432 1185 ntBASIC6.08□□□□□ -1.44
BDNFP23560 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC6.08□□□□□ -1.44
BDNFP23560 MRPS16P1-201ENST00000523462 412 ntBASIC6.08□□□□□ -1.44
BDNFP23560 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
BDNFP23560 AC022404.1-201ENST00000555320 273 ntBASIC6.08□□□□□ -1.44
BDNFP23560 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC6.08□□□□□ -1.44
BDNFP23560 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC6.08□□□□□ -1.44
BDNFP23560 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC6.08□□□□□ -1.44
BDNFP23560 MIR4505-201ENST00000582238 73 ntBASIC6.08□□□□□ -1.44
BDNFP23560 HCG18-243ENST00000602498 327 ntTSL 3 BASIC6.08□□□□□ -1.44
BDNFP23560 AC090953.1-201ENST00000604305 1092 ntBASIC6.08□□□□□ -1.44
BDNFP23560 KATNBL1P1-201ENST00000605192 748 ntBASIC6.08□□□□□ -1.44
BDNFP23560 AL162233.1-201ENST00000620014 944 ntBASIC6.08□□□□□ -1.44
BDNFP23560 AC079298.2-201ENST00000623885 459 ntBASIC6.08□□□□□ -1.44
BDNFP23560 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
BDNFP23560 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
BDNFP23560 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
BDNFP23560 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC6.08□□□□□ -1.44
BDNFP23560 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
BDNFP23560 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC6.08□□□□□ -1.44
BDNFP23560 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
BDNFP23560 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC6.08□□□□□ -1.44
BDNFP23560 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
BDNFP23560 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
BDNFP23560 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
BDNFP23560 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
BDNFP23560 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
BDNFP23560 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC6.07□□□□□ -1.44
BDNFP23560 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC6.07□□□□□ -1.44
BDNFP23560 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC6.07□□□□□ -1.44
BDNFP23560 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
BDNFP23560 SELE-204ENST00000367776 3576 ntTSL 5 BASIC6.07□□□□□ -1.44
BDNFP23560 SELE-205ENST00000367777 3576 ntTSL 5 BASIC6.07□□□□□ -1.44
BDNFP23560 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
BDNFP23560 AC105402.1-201ENST00000413336 545 ntBASIC6.07□□□□□ -1.44
BDNFP23560 RANP4-201ENST00000413361 655 ntBASIC6.07□□□□□ -1.44
BDNFP23560 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC6.07□□□□□ -1.44
BDNFP23560 AL513325.1-201ENST00000417716 1034 ntBASIC6.07□□□□□ -1.44
BDNFP23560 NIFKP3-201ENST00000417799 865 ntBASIC6.07□□□□□ -1.44
BDNFP23560 YY1P1-201ENST00000427625 668 ntBASIC6.07□□□□□ -1.44
BDNFP23560 MTND4LP14-201ENST00000429447 288 ntBASIC6.07□□□□□ -1.44
BDNFP23560 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC6.07□□□□□ -1.44
BDNFP23560 MTND2P21-201ENST00000436242 1042 ntBASIC6.07□□□□□ -1.44
BDNFP23560 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC6.07□□□□□ -1.44
BDNFP23560 AC005297.1-201ENST00000444765 862 ntBASIC6.07□□□□□ -1.44
BDNFP23560 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC6.07□□□□□ -1.44
BDNFP23560 AC018638.3-201ENST00000461273 132 ntBASIC6.07□□□□□ -1.44
BDNFP23560 RN7SL515P-201ENST00000463999 297 ntBASIC6.07□□□□□ -1.44
BDNFP23560 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC6.07□□□□□ -1.44
BDNFP23560 OR9N1P-202ENST00000494289 481 ntBASIC6.07□□□□□ -1.44
BDNFP23560 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC6.07□□□□□ -1.44
BDNFP23560 AC105384.2-201ENST00000508433 640 ntBASIC6.07□□□□□ -1.44
BDNFP23560 SSX6-203ENST00000509958 336 ntTSL 3 BASIC6.07□□□□□ -1.44
BDNFP23560 AC074087.1-201ENST00000512059 724 ntBASIC6.07□□□□□ -1.44
BDNFP23560 HMGB1P46-201ENST00000520062 610 ntBASIC6.07□□□□□ -1.44
BDNFP23560 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC6.07□□□□□ -1.44
BDNFP23560 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC6.07□□□□□ -1.44
BDNFP23560 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC6.07□□□□□ -1.44
BDNFP23560 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC6.07□□□□□ -1.44
BDNFP23560 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC6.07□□□□□ -1.44
BDNFP23560 IGBP1P1-201ENST00000554337 1009 ntBASIC6.07□□□□□ -1.44
BDNFP23560 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC6.07□□□□□ -1.44
BDNFP23560 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC6.07□□□□□ -1.44
BDNFP23560 AC063977.5-201ENST00000601044 974 ntBASIC6.07□□□□□ -1.44
BDNFP23560 AC006363.1-201ENST00000603806 463 ntBASIC6.07□□□□□ -1.44
BDNFP23560 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC6.07□□□□□ -1.44
BDNFP23560 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC6.07□□□□□ -1.44
BDNFP23560 AL390318.1-201ENST00000624564 687 ntBASIC6.07□□□□□ -1.44
BDNFP23560 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
BDNFP23560 AL137141.1-201ENST00000624622 4836 ntBASIC6.07□□□□□ -1.44
BDNFP23560 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
BDNFP23560 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
BDNFP23560 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC6.07□□□□□ -1.44
BDNFP23560 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
BDNFP23560 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
BDNFP23560 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
BDNFP23560 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC6.06□□□□□ -1.44
BDNFP23560 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC6.06□□□□□ -1.44
BDNFP23560 AL118496.1-201ENST00000440201 1812 ntBASIC6.06□□□□□ -1.44
BDNFP23560 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
BDNFP23560 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC6.06□□□□□ -1.44
BDNFP23560 AL078621.3-201ENST00000623707 2042 ntBASIC6.06□□□□□ -1.44
BDNFP23560 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
BDNFP23560 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
BDNFP23560 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC6.06□□□□□ -1.44
BDNFP23560 DDX18P4-201ENST00000511690 1966 ntBASIC6.06□□□□□ -1.44
BDNFP23560 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC6.06□□□□□ -1.44
BDNFP23560 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
BDNFP23560 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
BDNFP23560 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
BDNFP23560 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
BDNFP23560 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
BDNFP23560 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC6.06□□□□□ -1.44
BDNFP23560 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
BDNFP23560 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
BDNFP23560 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
BDNFP23560 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
BDNFP23560 CYP2AC1P-201ENST00000407830 1173 ntBASIC6.06□□□□□ -1.44
BDNFP23560 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC6.06□□□□□ -1.44
BDNFP23560 DPY19L1P2-201ENST00000426647 915 ntBASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 175.8 ms