Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 AC013470.3-201ENST00000420252 1194 ntBASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 CYCSP6-201ENST00000434498 302 ntBASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 ZNF736P1Y-201ENST00000440402 1276 ntBASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 AC105399.1-202ENST00000447303 205 ntBASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 MTND6P5-201ENST00000448266 512 ntBASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 RPS26P39-201ENST00000469206 341 ntBASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 MTND6P2-201ENST00000512226 524 ntBASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 HNRNPRP2-201ENST00000528421 743 ntBASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 FKBP1AP1-201ENST00000594588 318 ntBASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 OR51C1P-201ENST00000608504 942 ntBASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 AC004808.2-201ENST00000627965 773 ntBASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 AC092111.2-201ENST00000611627 1414 ntBASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 AL121839.2-201ENST00000565058 6943 ntBASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 Z83820.1-201ENST00000456978 1499 ntBASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 RPL35AP24-201ENST00000413846 330 ntBASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 GTF3AP1-201ENST00000416942 1004 ntBASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 EIF2S2P3-201ENST00000428356 999 ntBASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 LINC02210-201ENST00000444561 288 ntBASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 RPS23P9-201ENST00000448848 438 ntBASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 RN7SL188P-201ENST00000469842 285 ntBASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 SCARNA21.2-201ENST00000516600 166 ntBASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 SCARNA16.4-201ENST00000516956 187 ntBASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 RNU6-943P-201ENST00000516960 98 ntBASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 BLZF2P-201ENST00000553776 1130 ntBASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 GMCL1P2-201ENST00000605230 823 ntBASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 AC020978.9-201ENST00000624380 1141 ntBASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 AP002371.2-201ENST00000624450 503 ntBASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 AL163152.1-201ENST00000642001 374 ntBASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 AC020633.1-201ENST00000468439 2247 ntBASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 ADAM24P-201ENST00000398655 2101 ntBASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SNX9Q9Y5X1 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SNX9Q9Y5X1 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
SNX9Q9Y5X1 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.85□□□□□ -1.47
SNX9Q9Y5X1 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
SNX9Q9Y5X1 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SNX9Q9Y5X1 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
SNX9Q9Y5X1 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.85□□□□□ -1.47
SNX9Q9Y5X1 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.85□□□□□ -1.47
SNX9Q9Y5X1 AL353796.1-201ENST00000561542 3241 ntBASIC5.85□□□□□ -1.47
SNX9Q9Y5X1 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.85□□□□□ -1.47
SNX9Q9Y5X1 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SNX9Q9Y5X1 CIR1P2-201ENST00000514821 1342 ntBASIC5.85□□□□□ -1.47
SNX9Q9Y5X1 RNA5SP335-201ENST00000363817 110 ntBASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms