Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 PRLR-219ENST00000619676 1402 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 SAMD3-203ENST00000437477 2028 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 SPRY1-201ENST00000339241 2348 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 TCF12-207ENST00000557843 4076 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 SLC39A12-203ENST00000377374 2639 ntAPPRIS P3 TSL 2 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 TXNIP-204ENST00000582401 2926 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 AL354719.2-201ENST00000429530 1454 ntTSL 2 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 SLC16A4-202ENST00000369781 2082 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 NAV2-202ENST00000360655 10667 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 CD163-209ENST00000541972 3590 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 ZNF793-207ENST00000587986 3869 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 ANKRD30A-205ENST00000611781 4474 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 SLC30A6-201ENST00000282587 5089 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 CARD8-217ENST00000520753 3041 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 PPP2R5C-205ENST00000445439 1526 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 DCP1B-205ENST00000540622 1547 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 PIGN-233ENST00000639342 4305 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 PPWD1-201ENST00000261308 2166 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 AL590542.1-201ENST00000449314 1596 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 NXPE3-203ENST00000477909 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 ANK2-203ENST00000394537 6313 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 INSL5-201ENST00000304526 715 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 RNU1-85P-201ENST00000364127 164 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 RNA5SP396-201ENST00000364834 120 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 RNU6-444P-201ENST00000383988 108 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 RNU6-809P-201ENST00000384461 107 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 PRRC2CP1-201ENST00000404428 159 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 RNU6-248P-201ENST00000410720 107 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 PPIAP30-201ENST00000415473 519 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 AC017104.2-201ENST00000417000 321 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 B3GALNT1P1-201ENST00000420569 975 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 NPM1P34-201ENST00000428821 893 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 FTO-202ENST00000431610 707 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 NQO1-204ENST00000439109 924 ntTSL 2 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 ACTR3P2-201ENST00000439585 1257 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 SNX18P9-201ENST00000440580 835 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 RPSA-202ENST00000443003 1032 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 CXCR2P1-202ENST00000443392 1074 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 MTCO1P48-201ENST00000448024 1096 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 RPL39P6-201ENST00000448289 150 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 AC004692.1-201ENST00000455430 424 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 RN7SL688P-201ENST00000471754 275 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 AC092989.1-201ENST00000481235 277 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 FAM172BP-201ENST00000487497 1089 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 KLRA1P-201ENST00000503499 986 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 PDLIM1P4-201ENST00000504327 1006 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 OR7E163P-201ENST00000505943 894 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 AC139713.2-212ENST00000506982 832 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 PRDX4P1-201ENST00000507189 574 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 IGLVI-42-201ENST00000522485 381 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 ARL2BPP5-201ENST00000523141 481 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 EGLN3P1-201ENST00000541727 720 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 AC090971.3-201ENST00000557871 1041 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 AC104785.1-201ENST00000603220 588 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 AC114546.4-201ENST00000624413 369 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 PDAP1-205ENST00000626285 120 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 AL049541.2-201ENST00000626377 555 ntBASIC5.65□□□□□ -1.5
CCDC140Q96MF4 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 ABCD3-202ENST00000370214 3538 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC140Q96MF4 HYDIN-206ENST00000393567 15719 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
CCDC140Q96MF4 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC140Q96MF4 AC092162.3-201ENST00000624511 1624 ntBASIC5.65□□□□□ -1.51
CCDC140Q96MF4 NME8-201ENST00000199447 2312 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC140Q96MF4 AL049697.1-201ENST00000507897 2301 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
CCDC140Q96MF4 ZNF816-203ENST00000357666 2697 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC140Q96MF4 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC140Q96MF4 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC5.65□□□□□ -1.51
CCDC140Q96MF4 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.65□□□□□ -1.51
CCDC140Q96MF4 TIA1-201ENST00000282574 3823 ntTSL 5 BASIC5.65□□□□□ -1.51
CCDC140Q96MF4 ZNF300-204ENST00000427179 4155 ntTSL 2 BASIC5.65□□□□□ -1.51
CCDC140Q96MF4 FBXO3-209ENST00000531080 1448 ntTSL 2 BASIC5.65□□□□□ -1.51
CCDC140Q96MF4 OR4G11P-202ENST00000642116 1414 ntBASIC5.65□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 157 ms