Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 RNA5-8SP5-201ENST00000365304 152 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 SNX10-203ENST00000409367 746 ntTSL 5 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AL590139.1-201ENST00000416267 400 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 P2RY10P2-201ENST00000416730 913 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 RPS17P17-201ENST00000419392 409 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 YWHABP2-201ENST00000540201 713 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AP005403.1-201ENST00000579720 229 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 RNA5SP455-201ENST00000365190 119 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 SNORA11.2-201ENST00000408318 127 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 TPT1P13-201ENST00000449760 499 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC012616.1-201ENST00000600294 197 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 RNA5SP319-201ENST00000362768 119 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 RNU1-136P-201ENST00000384181 164 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 RN7SKP125-201ENST00000410481 302 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 RN7SKP213-201ENST00000410746 298 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 USP9YP9-201ENST00000429406 715 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC083982.1-201ENST00000485679 344 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC015864.1-201ENST00000496512 544 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AP001880.2-201ENST00000538233 448 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AL133481.2-203ENST00000607558 139 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 MT-RNR2-201ENST00000387347 1559 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 MIR133B-201ENST00000362210 119 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 RNA5SP305-201ENST00000362665 119 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 SNORD8-201ENST00000363915 110 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 HCG14-201ENST00000444986 413 ntTSL 2 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC004980.4-201ENST00000513375 203 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC139697.1-201ENST00000548429 745 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC011447.4-201ENST00000587562 111 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AL009179.1-201ENST00000406085 265 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC092647.2-201ENST00000452998 253 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 OR7H2P-201ENST00000513483 306 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 TEX41-254ENST00000626394 423 ntTSL 5 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms