Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC3.91□□□□□ -1.78
FOXA3P55318 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC3.91□□□□□ -1.78
FOXA3P55318 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC3.91□□□□□ -1.78
FOXA3P55318 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC3.91□□□□□ -1.78
FOXA3P55318 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC3.91□□□□□ -1.78
FOXA3P55318 RPSAP32-201ENST00000432681 526 ntBASIC3.91□□□□□ -1.78
FOXA3P55318 HMGB3P24-201ENST00000433260 622 ntBASIC3.91□□□□□ -1.78
FOXA3P55318 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC3.91□□□□□ -1.78
FOXA3P55318 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC3.91□□□□□ -1.78
FOXA3P55318 AL672138.1-201ENST00000450604 1015 ntBASIC3.91□□□□□ -1.78
FOXA3P55318 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
FOXA3P55318 GYG1P1-201ENST00000460864 698 ntBASIC3.91□□□□□ -1.78
FOXA3P55318 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
FOXA3P55318 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC3.91□□□□□ -1.78
FOXA3P55318 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC3.91□□□□□ -1.78
FOXA3P55318 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
FOXA3P55318 RPS27AP18-201ENST00000515536 459 ntBASIC3.91□□□□□ -1.78
FOXA3P55318 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC3.91□□□□□ -1.78
FOXA3P55318 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
FOXA3P55318 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
FOXA3P55318 AC007956.1-201ENST00000555623 542 ntBASIC3.91□□□□□ -1.78
FOXA3P55318 HMGN1P26-201ENST00000558737 303 ntBASIC3.91□□□□□ -1.78
FOXA3P55318 AGGF1P9-201ENST00000561884 913 ntBASIC3.91□□□□□ -1.78
FOXA3P55318 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC3.91□□□□□ -1.78
FOXA3P55318 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC3.91□□□□□ -1.78
FOXA3P55318 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC3.91□□□□□ -1.78
FOXA3P55318 MIR6883-201ENST00000614952 78 ntBASIC3.91□□□□□ -1.78
FOXA3P55318 AC083843.3-201ENST00000623679 2186 ntBASIC3.91□□□□□ -1.78
FOXA3P55318 AC007603.3-201ENST00000636915 979 ntBASIC3.91□□□□□ -1.78
FOXA3P55318 CASC19-238ENST00000641523 1558 ntBASIC3.91□□□□□ -1.78
FOXA3P55318 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC3.91□□□□□ -1.78
FOXA3P55318 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
FOXA3P55318 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
FOXA3P55318 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
FOXA3P55318 FGG-205ENST00000407946 1636 ntTSL 5 BASIC3.91□□□□□ -1.78
FOXA3P55318 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
FOXA3P55318 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
FOXA3P55318 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
FOXA3P55318 SALL4P2-201ENST00000423288 2910 ntBASIC3.91□□□□□ -1.78
FOXA3P55318 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.78
FOXA3P55318 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
FOXA3P55318 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
FOXA3P55318 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
FOXA3P55318 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
FOXA3P55318 AC022306.1-201ENST00000560489 1562 ntBASIC3.9□□□□□ -1.78
FOXA3P55318 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC3.9□□□□□ -1.78
FOXA3P55318 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.78
FOXA3P55318 ALB-214ENST00000509063 1911 ntTSL 5 BASIC3.9□□□□□ -1.78
FOXA3P55318 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC3.9□□□□□ -1.78
FOXA3P55318 AC000123.3-201ENST00000624029 4975 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
FOXA3P55318 AC090616.2-201ENST00000358484 431 ntTSL 3 BASIC3.9□□□□□ -1.79
FOXA3P55318 RNA5SP223-201ENST00000365174 120 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 PAGE2B-201ENST00000374971 493 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
FOXA3P55318 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
FOXA3P55318 RMRPP5-201ENST00000411156 267 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 TMBIM7P-201ENST00000418074 855 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
FOXA3P55318 AC013429.2-201ENST00000418798 781 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC3.9□□□□□ -1.79
FOXA3P55318 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC3.9□□□□□ -1.79
FOXA3P55318 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC3.9□□□□□ -1.79
FOXA3P55318 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC3.9□□□□□ -1.79
FOXA3P55318 AL161722.2-201ENST00000434731 981 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC3.9□□□□□ -1.79
FOXA3P55318 RPL12P49-201ENST00000441100 121 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 THAP12P8-201ENST00000447914 2115 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 AP000547.1-201ENST00000454360 617 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC3.9□□□□□ -1.79
FOXA3P55318 NENFP3-201ENST00000503735 313 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC3.9□□□□□ -1.79
FOXA3P55318 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC3.9□□□□□ -1.79
FOXA3P55318 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC3.9□□□□□ -1.79
FOXA3P55318 MTND6P2-201ENST00000512226 524 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 AC099805.1-205ENST00000521794 837 ntTSL 2 BASIC3.9□□□□□ -1.79
FOXA3P55318 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC3.9□□□□□ -1.79
FOXA3P55318 MRPS16P1-201ENST00000523462 412 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 HNRNPRP2-201ENST00000528421 743 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC3.9□□□□□ -1.79
FOXA3P55318 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC3.9□□□□□ -1.79
FOXA3P55318 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC3.9□□□□□ -1.79
FOXA3P55318 DPPA2P4-201ENST00000563717 878 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC3.9□□□□□ -1.79
FOXA3P55318 MT1CP-201ENST00000567054 174 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC3.9□□□□□ -1.79
FOXA3P55318 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC3.9□□□□□ -1.79
FOXA3P55318 RN7SL708P-201ENST00000580952 299 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 SNORD91B-202ENST00000608459 222 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 AC097467.3-215ENST00000609486 793 ntTSL 5 BASIC3.9□□□□□ -1.79
FOXA3P55318 AC097467.3-214ENST00000610249 843 ntTSL 5 BASIC3.9□□□□□ -1.79
FOXA3P55318 AC092266.1-201ENST00000610958 165 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 uc_338.31-201ENST00000615595 186 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 MIR6721-201ENST00000617181 87 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC3.9□□□□□ -1.79
FOXA3P55318 SGO1-AS1-206ENST00000635369 442 ntTSL 5 BASIC3.9□□□□□ -1.79
FOXA3P55318 ACTR3BP5-201ENST00000448440 1479 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC3.9□□□□□ -1.79
FOXA3P55318 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC3.9□□□□□ -1.79
FOXA3P55318 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 126.3 ms