Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TIAM2-208ENST00000461783 6981 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
COL4A4P53420 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL4A4P53420 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.56□□□□□ -1.52
COL4A4P53420 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL4A4P53420 HMCN2-206ENST00000624552 15610 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
COL4A4P53420 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC5.56□□□□□ -1.52
COL4A4P53420 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.56□□□□□ -1.52
COL4A4P53420 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL4A4P53420 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
COL4A4P53420 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
COL4A4P53420 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL4A4P53420 AC004690.1-201ENST00000418216 328 ntBASIC5.56□□□□□ -1.52
COL4A4P53420 TXNP5-201ENST00000441043 315 ntBASIC5.56□□□□□ -1.52
COL4A4P53420 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC5.56□□□□□ -1.52
COL4A4P53420 AC079168.1-201ENST00000458741 345 ntBASIC5.56□□□□□ -1.52
COL4A4P53420 RNA5SP43-201ENST00000516559 110 ntBASIC5.56□□□□□ -1.52
COL4A4P53420 AC079064.1-201ENST00000528365 362 ntBASIC5.56□□□□□ -1.52
COL4A4P53420 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL4A4P53420 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC5.56□□□□□ -1.52
COL4A4P53420 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC5.56□□□□□ -1.52
COL4A4P53420 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL4A4P53420 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL4A4P53420 LCOR-201ENST00000286067 4542 ntBASIC5.56□□□□□ -1.52
COL4A4P53420 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL4A4P53420 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL4A4P53420 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
COL4A4P53420 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL4A4P53420 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL4A4P53420 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5.55□□□□□ -1.52
COL4A4P53420 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.55□□□□□ -1.52
COL4A4P53420 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL4A4P53420 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL4A4P53420 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL4A4P53420 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL4A4P53420 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL4A4P53420 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL4A4P53420 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC5.55□□□□□ -1.52
COL4A4P53420 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
COL4A4P53420 AC006210.2-201ENST00000367074 1545 ntBASIC5.55□□□□□ -1.52
COL4A4P53420 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL4A4P53420 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
COL4A4P53420 CHIAP3-201ENST00000423668 1133 ntBASIC5.55□□□□□ -1.52
COL4A4P53420 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC5.55□□□□□ -1.52
COL4A4P53420 MRPS21P2-201ENST00000424704 264 ntBASIC5.55□□□□□ -1.52
COL4A4P53420 RPS27AP6-201ENST00000427962 448 ntBASIC5.55□□□□□ -1.52
COL4A4P53420 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.55□□□□□ -1.52
COL4A4P53420 RPL7AP61-201ENST00000443410 636 ntBASIC5.55□□□□□ -1.52
COL4A4P53420 SCARNA9-201ENST00000530422 353 ntBASIC5.55□□□□□ -1.52
COL4A4P53420 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC5.55□□□□□ -1.52
COL4A4P53420 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.55□□□□□ -1.52
COL4A4P53420 MIR4277-201ENST00000578298 84 ntBASIC5.55□□□□□ -1.52
COL4A4P53420 AC103792.1-201ENST00000603591 919 ntBASIC5.55□□□□□ -1.52
COL4A4P53420 SSX9-202ENST00000608568 580 ntTSL 4 BASIC5.55□□□□□ -1.52
COL4A4P53420 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.55□□□□□ -1.52
COL4A4P53420 AP005131.7-201ENST00000610087 611 ntBASIC5.55□□□□□ -1.52
COL4A4P53420 MIR6839-201ENST00000620425 113 ntBASIC5.55□□□□□ -1.52
COL4A4P53420 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.55□□□□□ -1.52
COL4A4P53420 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL4A4P53420 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL4A4P53420 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL4A4P53420 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL4A4P53420 HYDIN2-203ENST00000614586 13885 ntBASIC5.55□□□□□ -1.52
COL4A4P53420 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL4A4P53420 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL4A4P53420 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL4A4P53420 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC5.54□□□□□ -1.52
COL4A4P53420 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL4A4P53420 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL4A4P53420 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL4A4P53420 PRNCR1-201ENST00000635449 12727 ntBASIC5.54□□□□□ -1.52
COL4A4P53420 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL4A4P53420 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.54□□□□□ -1.52
COL4A4P53420 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL4A4P53420 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.54□□□□□ -1.52
COL4A4P53420 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL4A4P53420 GPS2P1-201ENST00000411761 986 ntBASIC5.54□□□□□ -1.52
COL4A4P53420 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC5.54□□□□□ -1.52
COL4A4P53420 AC009480.2-201ENST00000422916 432 ntBASIC5.54□□□□□ -1.52
COL4A4P53420 AC012519.1-201ENST00000424588 610 ntBASIC5.54□□□□□ -1.52
COL4A4P53420 RPS4XP16-201ENST00000427198 791 ntBASIC5.54□□□□□ -1.52
COL4A4P53420 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC5.54□□□□□ -1.52
COL4A4P53420 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.54□□□□□ -1.52
COL4A4P53420 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC5.54□□□□□ -1.52
COL4A4P53420 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.54□□□□□ -1.52
COL4A4P53420 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.54□□□□□ -1.52
COL4A4P53420 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC5.54□□□□□ -1.52
COL4A4P53420 AP003080.1-202ENST00000526526 915 ntBASIC5.54□□□□□ -1.52
COL4A4P53420 RGS5-219ENST00000528019 512 ntTSL 4 BASIC5.54□□□□□ -1.52
COL4A4P53420 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL4A4P53420 AC005252.1-201ENST00000604518 1063 ntBASIC5.54□□□□□ -1.52
COL4A4P53420 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL4A4P53420 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC5.54□□□□□ -1.52
COL4A4P53420 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.54□□□□□ -1.52
COL4A4P53420 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL4A4P53420 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL4A4P53420 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
COL4A4P53420 AC091046.3-201ENST00000631455 1574 ntBASIC5.54□□□□□ -1.52
COL4A4P53420 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL4A4P53420 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL4A4P53420 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms