Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
CXCL12P48061 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
CXCL12P48061 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.3□□□□□ -1.56
CXCL12P48061 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC5.3□□□□□ -1.56
CXCL12P48061 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.3□□□□□ -1.56
CXCL12P48061 MIR4691-201ENST00000583764 85 ntBASIC5.3□□□□□ -1.56
CXCL12P48061 MIR4737-201ENST00000583979 81 ntBASIC5.3□□□□□ -1.56
CXCL12P48061 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CXCL12P48061 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
CXCL12P48061 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC5.3□□□□□ -1.56
CXCL12P48061 Z95114.1-201ENST00000624264 14574 ntBASIC5.3□□□□□ -1.56
CXCL12P48061 AC011933.2-201ENST00000578539 2790 ntBASIC5.3□□□□□ -1.56
CXCL12P48061 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
CXCL12P48061 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
CXCL12P48061 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CXCL12P48061 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CXCL12P48061 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
CXCL12P48061 AC007996.1-201ENST00000620414 2821 ntBASIC5.29□□□□□ -1.56
CXCL12P48061 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
CXCL12P48061 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
CXCL12P48061 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
CXCL12P48061 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CXCL12P48061 MAPK10-263ENST00000641052 4307 ntBASIC5.29□□□□□ -1.56
CXCL12P48061 AC112243.1-201ENST00000623949 3851 ntBASIC5.29□□□□□ -1.56
CXCL12P48061 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CXCL12P48061 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
CXCL12P48061 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
CXCL12P48061 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.29□□□□□ -1.56
CXCL12P48061 U3.3-201ENST00000362986 216 ntBASIC5.29□□□□□ -1.56
CXCL12P48061 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
CXCL12P48061 RPL23AP17-201ENST00000401064 499 ntBASIC5.29□□□□□ -1.56
CXCL12P48061 MIR1182-201ENST00000408363 97 ntBASIC5.29□□□□□ -1.56
CXCL12P48061 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.29□□□□□ -1.56
CXCL12P48061 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.29□□□□□ -1.56
CXCL12P48061 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.29□□□□□ -1.56
CXCL12P48061 AC092905.1-201ENST00000467527 949 ntBASIC5.29□□□□□ -1.56
CXCL12P48061 RN7SL188P-201ENST00000469842 285 ntBASIC5.29□□□□□ -1.56
CXCL12P48061 AC096741.1-201ENST00000472250 846 ntBASIC5.29□□□□□ -1.56
CXCL12P48061 AC140172.1-201ENST00000502928 141 ntBASIC5.29□□□□□ -1.56
CXCL12P48061 ST13P12-201ENST00000508958 1094 ntBASIC5.29□□□□□ -1.56
CXCL12P48061 BTF3P13-201ENST00000513224 490 ntBASIC5.29□□□□□ -1.56
CXCL12P48061 OR7H2P-201ENST00000513483 306 ntBASIC5.29□□□□□ -1.56
CXCL12P48061 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC5.29□□□□□ -1.56
CXCL12P48061 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC5.29□□□□□ -1.56
CXCL12P48061 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC5.29□□□□□ -1.56
CXCL12P48061 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
CXCL12P48061 RPL27-207ENST00000590864 569 ntTSL 2 BASIC5.29□□□□□ -1.56
CXCL12P48061 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC5.29□□□□□ -1.56
CXCL12P48061 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CXCL12P48061 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
CXCL12P48061 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CXCL12P48061 AC022034.1-201ENST00000512867 2156 ntBASIC5.29□□□□□ -1.56
CXCL12P48061 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC5.29□□□□□ -1.56
CXCL12P48061 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
CXCL12P48061 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
CXCL12P48061 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.29□□□□□ -1.56
CXCL12P48061 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.29□□□□□ -1.56
CXCL12P48061 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CXCL12P48061 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
CXCL12P48061 SDAD1P1-202ENST00000524156 2051 ntBASIC5.28□□□□□ -1.56
CXCL12P48061 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.28□□□□□ -1.56
CXCL12P48061 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
CXCL12P48061 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
CXCL12P48061 OR9K1P-202ENST00000641111 3217 ntBASIC5.28□□□□□ -1.56
CXCL12P48061 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.28□□□□□ -1.56
CXCL12P48061 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CXCL12P48061 RNU1-146P-201ENST00000364015 165 ntBASIC5.28□□□□□ -1.56
CXCL12P48061 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC5.28□□□□□ -1.56
CXCL12P48061 AC019050.1-201ENST00000418508 492 ntBASIC5.28□□□□□ -1.56
CXCL12P48061 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC5.28□□□□□ -1.56
CXCL12P48061 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.28□□□□□ -1.56
CXCL12P48061 AC016712.1-201ENST00000431088 378 ntBASIC5.28□□□□□ -1.56
CXCL12P48061 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.28□□□□□ -1.56
CXCL12P48061 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.28□□□□□ -1.56
CXCL12P48061 KNOP1P3-201ENST00000446933 426 ntBASIC5.28□□□□□ -1.56
CXCL12P48061 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC5.28□□□□□ -1.56
CXCL12P48061 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC5.28□□□□□ -1.56
CXCL12P48061 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CXCL12P48061 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC5.28□□□□□ -1.56
CXCL12P48061 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC5.28□□□□□ -1.56
CXCL12P48061 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC5.28□□□□□ -1.56
CXCL12P48061 MAL2-201ENST00000522112 573 ntTSL 4 BASIC5.28□□□□□ -1.56
CXCL12P48061 AC027667.1-201ENST00000545814 304 ntBASIC5.28□□□□□ -1.56
CXCL12P48061 BGLT3-201ENST00000564523 994 ntBASIC5.28□□□□□ -1.56
CXCL12P48061 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.28□□□□□ -1.56
CXCL12P48061 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
CXCL12P48061 AP000769.2-201ENST00000602344 396 ntBASIC5.28□□□□□ -1.56
CXCL12P48061 AL157762.1-201ENST00000619612 415 ntBASIC5.28□□□□□ -1.56
CXCL12P48061 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
CXCL12P48061 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
CXCL12P48061 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CXCL12P48061 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CXCL12P48061 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC5.28□□□□□ -1.56
CXCL12P48061 UGT2B24P-201ENST00000514441 1597 ntBASIC5.28□□□□□ -1.56
CXCL12P48061 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CXCL12P48061 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CXCL12P48061 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CXCL12P48061 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
CXCL12P48061 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.28□□□□□ -1.56
CXCL12P48061 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 125.2 ms