Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC034229.2-201ENST00000566945 2508 ntBASIC6.26□□□□□ -1.41
BRCA1P38398 AC007998.4-201ENST00000612496 2533 ntBASIC6.26□□□□□ -1.41
BRCA1P38398 OR9G4-201ENST00000302957 984 ntBASIC6.26□□□□□ -1.41
BRCA1P38398 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
BRCA1P38398 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
BRCA1P38398 RPS17P17-201ENST00000419392 409 ntBASIC6.26□□□□□ -1.41
BRCA1P38398 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC6.26□□□□□ -1.41
BRCA1P38398 NRBF2P3-201ENST00000432731 865 ntBASIC6.26□□□□□ -1.41
BRCA1P38398 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC6.26□□□□□ -1.41
BRCA1P38398 RPL21P129-201ENST00000491732 478 ntBASIC6.26□□□□□ -1.41
BRCA1P38398 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC6.26□□□□□ -1.41
BRCA1P38398 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC6.26□□□□□ -1.41
BRCA1P38398 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC6.26□□□□□ -1.41
BRCA1P38398 FAM174B-202ENST00000553393 495 ntTSL 2 BASIC6.26□□□□□ -1.41
BRCA1P38398 GLRXP2-201ENST00000555594 321 ntBASIC6.26□□□□□ -1.41
BRCA1P38398 AC069366.1-201ENST00000583159 838 ntBASIC6.26□□□□□ -1.41
BRCA1P38398 AL683813.2-201ENST00000605245 502 ntBASIC6.26□□□□□ -1.41
BRCA1P38398 MIR6830-201ENST00000636015 70 ntBASIC6.26□□□□□ -1.41
BRCA1P38398 UGP2-232ENST00000640075 567 ntTSL 5 BASIC6.26□□□□□ -1.41
BRCA1P38398 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
BRCA1P38398 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC6.26□□□□□ -1.41
BRCA1P38398 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
BRCA1P38398 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC6.26□□□□□ -1.41
BRCA1P38398 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
BRCA1P38398 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
BRCA1P38398 HMCN2-206ENST00000624552 15610 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
BRCA1P38398 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC6.26□□□□□ -1.41
BRCA1P38398 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC6.26□□□□□ -1.41
BRCA1P38398 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
BRCA1P38398 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC6.26□□□□□ -1.41
BRCA1P38398 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC6.26□□□□□ -1.41
BRCA1P38398 CBX1P1-201ENST00000440184 427 ntBASIC6.26□□□□□ -1.41
BRCA1P38398 RN7SKP92-201ENST00000517266 244 ntBASIC6.26□□□□□ -1.41
BRCA1P38398 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC6.26□□□□□ -1.41
BRCA1P38398 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC6.26□□□□□ -1.41
BRCA1P38398 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC6.26□□□□□ -1.41
BRCA1P38398 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC6.26□□□□□ -1.41
BRCA1P38398 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
BRCA1P38398 AC108738.1-201ENST00000603703 237 ntBASIC6.26□□□□□ -1.41
BRCA1P38398 AC079414.3-201ENST00000612986 1090 ntBASIC6.26□□□□□ -1.41
BRCA1P38398 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
BRCA1P38398 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC6.25□□□□□ -1.41
BRCA1P38398 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
BRCA1P38398 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
BRCA1P38398 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
BRCA1P38398 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
BRCA1P38398 AC104118.1-201ENST00000607625 1589 ntBASIC6.25□□□□□ -1.41
BRCA1P38398 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC6.25□□□□□ -1.41
BRCA1P38398 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
BRCA1P38398 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC6.25□□□□□ -1.41
BRCA1P38398 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC6.25□□□□□ -1.41
BRCA1P38398 ZNF426-201ENST00000253115 7085 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
BRCA1P38398 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
BRCA1P38398 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
BRCA1P38398 AC005225.5-201ENST00000623547 2225 ntBASIC6.25□□□□□ -1.41
BRCA1P38398 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC6.25□□□□□ -1.41
BRCA1P38398 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
BRCA1P38398 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC6.25□□□□□ -1.41
BRCA1P38398 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC6.25□□□□□ -1.41
BRCA1P38398 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC6.25□□□□□ -1.41
BRCA1P38398 RPL12P34-201ENST00000424532 479 ntBASIC6.25□□□□□ -1.41
BRCA1P38398 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
BRCA1P38398 CDC27P1-201ENST00000445384 715 ntBASIC6.25□□□□□ -1.41
BRCA1P38398 NOP56P2-201ENST00000447491 769 ntBASIC6.25□□□□□ -1.41
BRCA1P38398 AL359073.1-201ENST00000448036 403 ntBASIC6.25□□□□□ -1.41
BRCA1P38398 RPL7P40-201ENST00000481703 745 ntBASIC6.25□□□□□ -1.41
BRCA1P38398 snoU109.5-201ENST00000516231 132 ntBASIC6.25□□□□□ -1.41
BRCA1P38398 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
BRCA1P38398 CCDC58P3-201ENST00000590792 430 ntBASIC6.25□□□□□ -1.41
BRCA1P38398 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
BRCA1P38398 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC6.25□□□□□ -1.41
BRCA1P38398 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
BRCA1P38398 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
BRCA1P38398 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC6.25□□□□□ -1.41
BRCA1P38398 DCX-208ENST00000636035 9269 ntAPPRIS ALT1 TSL 2 BASIC6.25□□□□□ -1.41
BRCA1P38398 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
BRCA1P38398 CCDC162P-202ENST00000368966 6751 ntBASIC6.25□□□□□ -1.41
BRCA1P38398 KIAA1210-201ENST00000402510 7824 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
BRCA1P38398 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
BRCA1P38398 RNA5SP388-201ENST00000362584 119 ntBASIC6.24□□□□□ -1.41
BRCA1P38398 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
BRCA1P38398 PPIAP9-201ENST00000403866 498 ntBASIC6.24□□□□□ -1.41
BRCA1P38398 AL591848.1-201ENST00000413092 322 ntBASIC6.24□□□□□ -1.41
BRCA1P38398 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
BRCA1P38398 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC6.24□□□□□ -1.41
BRCA1P38398 AC005154.2-201ENST00000438110 379 ntBASIC6.24□□□□□ -1.41
BRCA1P38398 AC122718.1-201ENST00000439448 744 ntBASIC6.24□□□□□ -1.41
BRCA1P38398 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC6.24□□□□□ -1.41
BRCA1P38398 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC6.24□□□□□ -1.41
BRCA1P38398 FAM133DP-201ENST00000464802 691 ntBASIC6.24□□□□□ -1.41
BRCA1P38398 GAPDHP62-201ENST00000515313 990 ntBASIC6.24□□□□□ -1.41
BRCA1P38398 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC6.24□□□□□ -1.41
BRCA1P38398 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
BRCA1P38398 SOX5P1-201ENST00000524155 1127 ntBASIC6.24□□□□□ -1.41
BRCA1P38398 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
BRCA1P38398 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC6.24□□□□□ -1.41
BRCA1P38398 BNIP3P22-201ENST00000593399 556 ntBASIC6.24□□□□□ -1.41
BRCA1P38398 AC020915.5-201ENST00000596836 964 ntBASIC6.24□□□□□ -1.41
BRCA1P38398 AL139041.1-201ENST00000605480 610 ntBASIC6.24□□□□□ -1.41
BRCA1P38398 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC6.24□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms