Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXD4P09016 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXD4P09016 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXD4P09016 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HOXD4P09016 CA1-225ENST00000626824 2405 ntTSL 5 BASIC5.07□□□□□ -1.6
HOXD4P09016 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXD4P09016 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HOXD4P09016 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HOXD4P09016 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXD4P09016 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HOXD4P09016 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.07□□□□□ -1.6
HOXD4P09016 AC007938.2-201ENST00000604666 2634 ntBASIC5.07□□□□□ -1.6
HOXD4P09016 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
HOXD4P09016 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXD4P09016 AC116158.1-201ENST00000560231 2129 ntBASIC5.06□□□□□ -1.6
HOXD4P09016 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HOXD4P09016 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXD4P09016 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HOXD4P09016 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXD4P09016 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC5.06□□□□□ -1.6
HOXD4P09016 AC073136.1-201ENST00000449426 2884 ntBASIC5.06□□□□□ -1.6
HOXD4P09016 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXD4P09016 RN7SKP185-201ENST00000362813 326 ntBASIC5.06□□□□□ -1.6
HOXD4P09016 RNA5SP443-201ENST00000363083 132 ntBASIC5.06□□□□□ -1.6
HOXD4P09016 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
HOXD4P09016 SETP15-201ENST00000412724 337 ntBASIC5.06□□□□□ -1.6
HOXD4P09016 AC006455.6-201ENST00000426192 893 ntBASIC5.06□□□□□ -1.6
HOXD4P09016 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.06□□□□□ -1.6
HOXD4P09016 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.06□□□□□ -1.6
HOXD4P09016 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC5.06□□□□□ -1.6
HOXD4P09016 RSL24D1P2-201ENST00000445584 366 ntBASIC5.06□□□□□ -1.6
HOXD4P09016 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC5.06□□□□□ -1.6
HOXD4P09016 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.06□□□□□ -1.6
HOXD4P09016 RPL35AP19-201ENST00000469425 329 ntBASIC5.06□□□□□ -1.6
HOXD4P09016 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC5.06□□□□□ -1.6
HOXD4P09016 GOLGA5P1-201ENST00000507317 980 ntBASIC5.06□□□□□ -1.6
HOXD4P09016 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC5.06□□□□□ -1.6
HOXD4P09016 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.06□□□□□ -1.6
HOXD4P09016 OR8A2P-201ENST00000528631 952 ntBASIC5.06□□□□□ -1.6
HOXD4P09016 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.06□□□□□ -1.6
HOXD4P09016 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC5.06□□□□□ -1.6
HOXD4P09016 AC244502.2-201ENST00000543361 851 ntBASIC5.06□□□□□ -1.6
HOXD4P09016 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.06□□□□□ -1.6
HOXD4P09016 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC5.06□□□□□ -1.6
HOXD4P09016 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC5.06□□□□□ -1.6
HOXD4P09016 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.06□□□□□ -1.6
HOXD4P09016 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.06□□□□□ -1.6
HOXD4P09016 AL512329.2-201ENST00000607350 548 ntBASIC5.06□□□□□ -1.6
HOXD4P09016 AL122125.1-201ENST00000616999 600 ntBASIC5.06□□□□□ -1.6
HOXD4P09016 AC005840.5-201ENST00000619166 599 ntBASIC5.06□□□□□ -1.6
HOXD4P09016 AC132068.1-201ENST00000623805 459 ntBASIC5.06□□□□□ -1.6
HOXD4P09016 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXD4P09016 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HOXD4P09016 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
HOXD4P09016 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HOXD4P09016 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXD4P09016 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HOXD4P09016 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
HOXD4P09016 MRE11P1-201ENST00000464884 2127 ntBASIC5.06□□□□□ -1.6
HOXD4P09016 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC5.06□□□□□ -1.6
HOXD4P09016 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.06□□□□□ -1.6
HOXD4P09016 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.06□□□□□ -1.6
HOXD4P09016 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.06□□□□□ -1.6
HOXD4P09016 AC083899.1-201ENST00000454465 3819 ntBASIC5.06□□□□□ -1.6
HOXD4P09016 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXD4P09016 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXD4P09016 AC011755.1-201ENST00000623763 2049 ntBASIC5.06□□□□□ -1.6
HOXD4P09016 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.05□□□□□ -1.6
HOXD4P09016 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
HOXD4P09016 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXD4P09016 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXD4P09016 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXD4P09016 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.05□□□□□ -1.6
HOXD4P09016 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HOXD4P09016 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.05□□□□□ -1.6
HOXD4P09016 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.05□□□□□ -1.6
HOXD4P09016 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.05□□□□□ -1.6
HOXD4P09016 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.05□□□□□ -1.6
HOXD4P09016 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.05□□□□□ -1.6
HOXD4P09016 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXD4P09016 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.05□□□□□ -1.6
HOXD4P09016 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HOXD4P09016 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXD4P09016 RN7SKP6-201ENST00000364795 319 ntBASIC5.05□□□□□ -1.6
HOXD4P09016 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXD4P09016 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXD4P09016 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
HOXD4P09016 MIR223-201ENST00000385204 110 ntBASIC5.05□□□□□ -1.6
HOXD4P09016 NPM1P40-201ENST00000412758 733 ntBASIC5.05□□□□□ -1.6
HOXD4P09016 METTL15P3-201ENST00000415522 1221 ntBASIC5.05□□□□□ -1.6
HOXD4P09016 AC244453.4-201ENST00000419150 388 ntBASIC5.05□□□□□ -1.6
HOXD4P09016 OR6C64P-201ENST00000419708 825 ntBASIC5.05□□□□□ -1.6
HOXD4P09016 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXD4P09016 CRIP1P1-201ENST00000427567 185 ntBASIC5.05□□□□□ -1.6
HOXD4P09016 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXD4P09016 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HOXD4P09016 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.05□□□□□ -1.6
HOXD4P09016 RN7SL329P-201ENST00000467740 299 ntBASIC5.05□□□□□ -1.6
HOXD4P09016 AC093270.2-201ENST00000486157 792 ntBASIC5.05□□□□□ -1.6
HOXD4P09016 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms