Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AP003080.1-202ENST00000526526 915 ntBASIC6.84□□□□□ -1.31
COL3A1P02461 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC6.84□□□□□ -1.31
COL3A1P02461 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC6.84□□□□□ -1.31
COL3A1P02461 AC022884.2-201ENST00000578535 580 ntBASIC6.84□□□□□ -1.31
COL3A1P02461 MIR4436B2-201ENST00000581415 91 ntBASIC6.84□□□□□ -1.31
COL3A1P02461 MIR4436B1-201ENST00000583272 91 ntBASIC6.84□□□□□ -1.31
COL3A1P02461 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL3A1P02461 AC026367.3-201ENST00000619032 590 ntBASIC6.84□□□□□ -1.31
COL3A1P02461 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC6.84□□□□□ -1.31
COL3A1P02461 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC6.84□□□□□ -1.31
COL3A1P02461 AC135068.12-201ENST00000637370 931 ntBASIC6.84□□□□□ -1.31
COL3A1P02461 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC6.84□□□□□ -1.31
COL3A1P02461 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.32
COL3A1P02461 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC6.84□□□□□ -1.32
COL3A1P02461 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC6.84□□□□□ -1.32
COL3A1P02461 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC6.84□□□□□ -1.32
COL3A1P02461 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC6.84□□□□□ -1.32
COL3A1P02461 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.32
COL3A1P02461 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC6.84□□□□□ -1.32
COL3A1P02461 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC6.84□□□□□ -1.32
COL3A1P02461 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL3A1P02461 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL3A1P02461 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL3A1P02461 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL3A1P02461 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL3A1P02461 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL3A1P02461 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC6.83□□□□□ -1.32
COL3A1P02461 CASC19-281ENST00000642118 1554 ntBASIC6.83□□□□□ -1.32
COL3A1P02461 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL3A1P02461 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL3A1P02461 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
COL3A1P02461 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
COL3A1P02461 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC6.83□□□□□ -1.32
COL3A1P02461 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC6.83□□□□□ -1.32
COL3A1P02461 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC6.83□□□□□ -1.32
COL3A1P02461 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC6.83□□□□□ -1.32
COL3A1P02461 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC6.83□□□□□ -1.32
COL3A1P02461 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC6.83□□□□□ -1.32
COL3A1P02461 AP002884.5-201ENST00000595053 1132 ntBASIC6.83□□□□□ -1.32
COL3A1P02461 AC105254.2-201ENST00000603636 436 ntBASIC6.83□□□□□ -1.32
COL3A1P02461 AC092944.2-201ENST00000605443 889 ntBASIC6.83□□□□□ -1.32
COL3A1P02461 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC6.83□□□□□ -1.32
COL3A1P02461 AC090510.2-201ENST00000617465 629 ntBASIC6.83□□□□□ -1.32
COL3A1P02461 AC007996.1-201ENST00000620414 2821 ntBASIC6.83□□□□□ -1.32
COL3A1P02461 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL3A1P02461 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC6.83□□□□□ -1.32
COL3A1P02461 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL3A1P02461 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC6.82□□□□□ -1.32
COL3A1P02461 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL3A1P02461 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
COL3A1P02461 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL3A1P02461 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
COL3A1P02461 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL3A1P02461 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL3A1P02461 AC083899.2-201ENST00000423285 1376 ntBASIC6.82□□□□□ -1.32
COL3A1P02461 SNORA74A-201ENST00000364089 198 ntBASIC6.82□□□□□ -1.32
COL3A1P02461 MRRF-207ENST00000373729 870 ntTSL 3 BASIC6.82□□□□□ -1.32
COL3A1P02461 MIR600-201ENST00000385007 98 ntBASIC6.82□□□□□ -1.32
COL3A1P02461 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL3A1P02461 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC6.82□□□□□ -1.32
COL3A1P02461 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC6.82□□□□□ -1.32
COL3A1P02461 IGHV5-78-201ENST00000450948 295 ntBASIC6.82□□□□□ -1.32
COL3A1P02461 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC6.82□□□□□ -1.32
COL3A1P02461 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL3A1P02461 MTCO3P42-201ENST00000509488 518 ntBASIC6.82□□□□□ -1.32
COL3A1P02461 MTCO3P39-201ENST00000514812 518 ntBASIC6.82□□□□□ -1.32
COL3A1P02461 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC6.82□□□□□ -1.32
COL3A1P02461 AC011840.5-201ENST00000582125 771 ntBASIC6.82□□□□□ -1.32
COL3A1P02461 PRPF19P1-201ENST00000584766 898 ntBASIC6.82□□□□□ -1.32
COL3A1P02461 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC6.82□□□□□ -1.32
COL3A1P02461 AL445528.2-201ENST00000620582 470 ntBASIC6.82□□□□□ -1.32
COL3A1P02461 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC6.82□□□□□ -1.32
COL3A1P02461 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL3A1P02461 INTS6P1-201ENST00000504674 2530 ntBASIC6.82□□□□□ -1.32
COL3A1P02461 AC112255.1-201ENST00000624070 2493 ntBASIC6.82□□□□□ -1.32
COL3A1P02461 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
COL3A1P02461 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL3A1P02461 C6orf89-204ENST00000480824 6861 ntAPPRIS ALT2 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL3A1P02461 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL3A1P02461 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL3A1P02461 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC6.81□□□□□ -1.32
COL3A1P02461 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
COL3A1P02461 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.81□□□□□ -1.32
COL3A1P02461 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
COL3A1P02461 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL3A1P02461 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC6.81□□□□□ -1.32
COL3A1P02461 RNA5SP455-201ENST00000365190 119 ntBASIC6.81□□□□□ -1.32
COL3A1P02461 MIR585-201ENST00000384887 94 ntBASIC6.81□□□□□ -1.32
COL3A1P02461 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
COL3A1P02461 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC6.81□□□□□ -1.32
COL3A1P02461 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC6.81□□□□□ -1.32
COL3A1P02461 FAM204CP-201ENST00000424489 642 ntBASIC6.81□□□□□ -1.32
COL3A1P02461 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC6.81□□□□□ -1.32
COL3A1P02461 PA2G4P6-201ENST00000438325 1197 ntBASIC6.81□□□□□ -1.32
COL3A1P02461 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC6.81□□□□□ -1.32
COL3A1P02461 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC6.81□□□□□ -1.32
COL3A1P02461 BX842559.2-201ENST00000451418 605 ntBASIC6.81□□□□□ -1.32
COL3A1P02461 COX6B1P5-201ENST00000509843 249 ntBASIC6.81□□□□□ -1.32
COL3A1P02461 AL512310.9-201ENST00000553311 948 ntBASIC6.81□□□□□ -1.32
COL3A1P02461 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC6.81□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms