Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
CUX2O14529 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.96
CUX2O14529 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC9.07□□□□□ -0.96
CUX2O14529 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
CUX2O14529 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
CUX2O14529 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC9.06□□□□□ -0.96
CUX2O14529 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
CUX2O14529 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
CUX2O14529 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC9.06□□□□□ -0.96
CUX2O14529 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
CUX2O14529 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC9.06□□□□□ -0.96
CUX2O14529 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC9.06□□□□□ -0.96
CUX2O14529 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC9.06□□□□□ -0.96
CUX2O14529 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC9.06□□□□□ -0.96
CUX2O14529 AC007620.2-201ENST00000600539 1697 ntTSL 5 BASIC9.06□□□□□ -0.96
CUX2O14529 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC9.06□□□□□ -0.96
CUX2O14529 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC9.06□□□□□ -0.96
CUX2O14529 RNA5SP447-201ENST00000363749 119 ntBASIC9.06□□□□□ -0.96
CUX2O14529 RN7SKP224-201ENST00000364140 325 ntBASIC9.06□□□□□ -0.96
CUX2O14529 AL121977.1-201ENST00000401636 979 ntBASIC9.06□□□□□ -0.96
CUX2O14529 AC073410.1-201ENST00000435125 589 ntBASIC9.06□□□□□ -0.96
CUX2O14529 AC104634.1-201ENST00000452720 462 ntBASIC9.06□□□□□ -0.96
CUX2O14529 AP001781.1-201ENST00000530977 207 ntBASIC9.06□□□□□ -0.96
CUX2O14529 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC9.06□□□□□ -0.96
CUX2O14529 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
CUX2O14529 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC9.05□□□□□ -0.96
CUX2O14529 AL137100.1-201ENST00000556703 1620 ntBASIC9.05□□□□□ -0.96
CUX2O14529 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
CUX2O14529 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
CUX2O14529 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
CUX2O14529 U3.3-201ENST00000362986 216 ntBASIC9.05□□□□□ -0.96
CUX2O14529 AL009179.1-201ENST00000406085 265 ntBASIC9.05□□□□□ -0.96
CUX2O14529 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC9.05□□□□□ -0.96
CUX2O14529 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC9.05□□□□□ -0.96
CUX2O14529 AC010326.1-201ENST00000462726 602 ntBASIC9.05□□□□□ -0.96
CUX2O14529 AC073358.1-201ENST00000505671 684 ntBASIC9.05□□□□□ -0.96
CUX2O14529 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC9.05□□□□□ -0.96
CUX2O14529 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC9.05□□□□□ -0.96
CUX2O14529 AC006130.2-201ENST00000586202 326 ntBASIC9.05□□□□□ -0.96
CUX2O14529 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC9.05□□□□□ -0.96
CUX2O14529 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
CUX2O14529 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC9.04□□□□□ -0.96
CUX2O14529 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC9.04□□□□□ -0.96
CUX2O14529 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
CUX2O14529 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC9.04□□□□□ -0.96
CUX2O14529 MRPS21P2-201ENST00000424704 264 ntBASIC9.04□□□□□ -0.96
CUX2O14529 GAS5-208ENST00000425771 242 ntTSL 3 BASIC9.04□□□□□ -0.96
CUX2O14529 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
CUX2O14529 FGB-207ENST00000509493 1164 ntTSL 5 BASIC9.04□□□□□ -0.96
CUX2O14529 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC9.04□□□□□ -0.96
CUX2O14529 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC9.04□□□□□ -0.96
CUX2O14529 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC9.04□□□□□ -0.96
CUX2O14529 RN7SKP253-201ENST00000516424 309 ntBASIC9.04□□□□□ -0.96
CUX2O14529 SNORA67.7-201ENST00000516664 135 ntBASIC9.04□□□□□ -0.96
CUX2O14529 TBCA-207ENST00000520039 157 ntTSL 3 BASIC9.04□□□□□ -0.96
CUX2O14529 YWHABP2-201ENST00000540201 713 ntBASIC9.04□□□□□ -0.96
CUX2O14529 AP005403.1-201ENST00000579720 229 ntBASIC9.04□□□□□ -0.96
CUX2O14529 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC9.04□□□□□ -0.96
CUX2O14529 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC9.04□□□□□ -0.96
CUX2O14529 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
CUX2O14529 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC9.04□□□□□ -0.96
CUX2O14529 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC9.04□□□□□ -0.96
CUX2O14529 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC9.04□□□□□ -0.96
CUX2O14529 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC9.04□□□□□ -0.96
CUX2O14529 AL078621.3-201ENST00000623707 2042 ntBASIC9.03□□□□□ -0.96
CUX2O14529 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
CUX2O14529 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC9.03□□□□□ -0.96
CUX2O14529 AL732292.1-201ENST00000426692 226 ntBASIC9.03□□□□□ -0.96
CUX2O14529 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC9.03□□□□□ -0.96
CUX2O14529 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC9.03□□□□□ -0.96
CUX2O14529 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC9.03□□□□□ -0.96
CUX2O14529 OR7E128P-201ENST00000532736 1024 ntBASIC9.03□□□□□ -0.96
CUX2O14529 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC9.03□□□□□ -0.96
CUX2O14529 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
CUX2O14529 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC9.03□□□□□ -0.96
CUX2O14529 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC9.03□□□□□ -0.96
CUX2O14529 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC9.03□□□□□ -0.96
CUX2O14529 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC9.03□□□□□ -0.96
CUX2O14529 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC9.03□□□□□ -0.96
CUX2O14529 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
CUX2O14529 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC9.03□□□□□ -0.96
CUX2O14529 SLC7A14-201ENST00000231706 10103 ntAPPRIS P1 TSL 2 BASIC9.03□□□□□ -0.96
CUX2O14529 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
CUX2O14529 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC9.02□□□□□ -0.96
CUX2O14529 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.96
CUX2O14529 SNORA70F-201ENST00000384142 135 ntBASIC9.02□□□□□ -0.96
CUX2O14529 GAPDHP49-201ENST00000421421 961 ntBASIC9.02□□□□□ -0.96
CUX2O14529 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC9.02□□□□□ -0.96
CUX2O14529 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC9.02□□□□□ -0.96
CUX2O14529 IGBP1P3-201ENST00000447449 1000 ntBASIC9.02□□□□□ -0.96
CUX2O14529 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC9.02□□□□□ -0.96
CUX2O14529 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC9.02□□□□□ -0.96
CUX2O14529 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC9.02□□□□□ -0.96
CUX2O14529 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC9.02□□□□□ -0.96
CUX2O14529 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC9.02□□□□□ -0.96
CUX2O14529 USP29-201ENST00000254181 3705 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.96
CUX2O14529 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC9.02□□□□□ -0.96
CUX2O14529 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
CUX2O14529 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
CUX2O14529 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC9.02□□□□□ -0.97
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms