Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 Y_RNA.62-201ENST00000362840 99 ntBASIC5.66□□□□□ -1.5
PCDH9Q9HC56 Y_RNA.110-201ENST00000363220 99 ntBASIC5.66□□□□□ -1.5
PCDH9Q9HC56 RNA5SP241-201ENST00000391326 114 ntBASIC5.66□□□□□ -1.5
PCDH9Q9HC56 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 CDY17P-201ENST00000414121 1282 ntBASIC5.66□□□□□ -1.5
PCDH9Q9HC56 BMS1P17-202ENST00000416720 316 ntBASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AL390879.2-203ENST00000426943 1121 ntBASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AL590623.1-201ENST00000427864 105 ntBASIC5.66□□□□□ -1.5
PCDH9Q9HC56 ZFAND6P1-201ENST00000434138 605 ntBASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AC002504.1-201ENST00000438281 691 ntBASIC5.66□□□□□ -1.5
PCDH9Q9HC56 SDR42E1P3-201ENST00000438345 502 ntBASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AL161636.2-201ENST00000445179 927 ntBASIC5.66□□□□□ -1.5
PCDH9Q9HC56 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AP000547.1-201ENST00000454360 617 ntBASIC5.66□□□□□ -1.5
PCDH9Q9HC56 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AP000797.2-201ENST00000475768 606 ntBASIC5.66□□□□□ -1.5
PCDH9Q9HC56 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 MTND3P3-201ENST00000505004 126 ntBASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AC138866.2-201ENST00000508650 584 ntBASIC5.66□□□□□ -1.5
PCDH9Q9HC56 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AL049872.1-201ENST00000556323 322 ntBASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 MIR4310-201ENST00000582950 57 ntBASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AC008115.3-201ENST00000614874 549 ntBASIC5.66□□□□□ -1.5
PCDH9Q9HC56 WBP1LP8-201ENST00000617401 327 ntBASIC5.66□□□□□ -1.5
PCDH9Q9HC56 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.66□□□□□ -1.5
PCDH9Q9HC56 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 LINC02019-201ENST00000608605 2060 ntBASIC5.66□□□□□ -1.5
PCDH9Q9HC56 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 AL360270.2-201ENST00000562952 5985 ntBASIC5.65□□□□□ -1.5
PCDH9Q9HC56 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
PCDH9Q9HC56 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.65□□□□□ -1.5
PCDH9Q9HC56 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
PCDH9Q9HC56 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
PCDH9Q9HC56 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
PCDH9Q9HC56 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
PCDH9Q9HC56 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.65□□□□□ -1.5
PCDH9Q9HC56 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
PCDH9Q9HC56 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
PCDH9Q9HC56 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
PCDH9Q9HC56 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
PCDH9Q9HC56 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
PCDH9Q9HC56 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC5.65□□□□□ -1.5
PCDH9Q9HC56 U3.7-201ENST00000363668 216 ntBASIC5.65□□□□□ -1.5
PCDH9Q9HC56 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.65□□□□□ -1.5
PCDH9Q9HC56 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC5.65□□□□□ -1.5
PCDH9Q9HC56 RNA5SP122-201ENST00000384457 108 ntBASIC5.65□□□□□ -1.5
PCDH9Q9HC56 RNU6-883P-201ENST00000384597 107 ntBASIC5.65□□□□□ -1.5
PCDH9Q9HC56 AL050305.1-201ENST00000399993 1230 ntBASIC5.65□□□□□ -1.5
PCDH9Q9HC56 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.65□□□□□ -1.5
PCDH9Q9HC56 MGAT2P2-201ENST00000427194 797 ntBASIC5.65□□□□□ -1.5
PCDH9Q9HC56 AC104843.2-201ENST00000427666 297 ntBASIC5.65□□□□□ -1.5
PCDH9Q9HC56 RPL7AP49-201ENST00000429522 581 ntBASIC5.65□□□□□ -1.5
PCDH9Q9HC56 MTCO1P57-201ENST00000432182 261 ntBASIC5.65□□□□□ -1.5
PCDH9Q9HC56 AL591438.1-201ENST00000433508 581 ntBASIC5.65□□□□□ -1.5
PCDH9Q9HC56 AL590762.3-201ENST00000436372 640 ntBASIC5.65□□□□□ -1.5
PCDH9Q9HC56 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.65□□□□□ -1.5
PCDH9Q9HC56 AC016772.1-201ENST00000444170 1261 ntBASIC5.65□□□□□ -1.5
PCDH9Q9HC56 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
PCDH9Q9HC56 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
PCDH9Q9HC56 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC5.65□□□□□ -1.5
PCDH9Q9HC56 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC5.65□□□□□ -1.5
PCDH9Q9HC56 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
PCDH9Q9HC56 UGT2A3P7-201ENST00000510485 734 ntBASIC5.65□□□□□ -1.5
PCDH9Q9HC56 MTATP6P1-201ENST00000514057 681 ntBASIC5.65□□□□□ -1.5
PCDH9Q9HC56 SCARNA20.4-201ENST00000516969 131 ntBASIC5.65□□□□□ -1.5
PCDH9Q9HC56 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms